Table 9 SSR markers profile of the twenty indigenous Joha rice cultivars.

From: Morpho-molecular and nutritional profiling for yield improvement and value addition of indigenous aromatic Joha rice of Assam

Locus	Na	MAF	Ne	I	Ho	He	PIC
RM495	2	0.90	1.220	0.325	0.00	0.180	0.164
RM 283	4	0.40	3.509	1.320	0.00	0.715	0.665
RM 237	2	0.95	1.105	0.199	0.00	0.095	0.091
RM431	3	0.70	1.802	0.746	0.00	0.445	0.381
RM154	3	0.70	1.802	0.746	0.00	0.445	0.381
OSR 13	3	0.80	1.504	0.613	0.00	0.335	0.303
RM338	2	0.65	1.835	0.647	0.00	0.455	0.352
RM514	3	0.60	2.062	0.824	0.00	0.515	0.352
RM124	2	0.90	1.220	0.325	0.00	0.180	0.164
RM 161	2	0.55	1.980	0.688	0.00	0.495	0.373
RM133	3	0.75	1.681	0.731	0.00	0.405	0.368
RM 125	3	0.85	1.361	0.518	0.00	0.265	0.247
RM 118	4	0.55	2.469	1.070	0.00	0.595	0.531
RM 152	2	0.85	1.342	0.423	0.00	0.255	0.352
RM284	3	0.85	1.361	0.518	0.00	0.265	0.247
RM316	4	0.30	3.922	1.376	0.00	0.745	0.698
RM 215	2	0.95	1.105	0.199	0.00	0.095	0.091
RM 271	2	0.88	1.280	0.377	0.05	0.219	0.164
RM484	2	0.85	1.342	0.423	0.00	0.255	0.352
RM 536	2	0.50	2.000	0.693	0.00	0.500	0.375
RM 227	2	0.60	1.923	0.673	0.00	0.480	0.365
RM 29	3	0.45	2.410	0.949	0.00	0.585	0.495
RM489	3	0.70	1.802	0.746	0.00	0.456	0.381
RM55	3	0.85	1.361	0.518	0.00	0.272	0.247
RM 510	2	0.55	1.980	0.688	0.00	0.508	0.373
RM474	3	0.60	2.247	0.938	0.00	0.569	0.491
RM 171	3	0.45	2.740	1.049	0.00	0.651	0.559
RM212	2	0.90	1.220	0.325	0.00	0.185	0.164
RM23	3	0.60	2.062	0.824	0.00	0.528	0.424
RM 229	2	0.70	1.724	0.611	0.00	0.431	0.332
RM1003	2	0.70	1.724	0.611	0.00	0.431	0.332
RM29	4	0.60	2.299	1.033	0.00	0.579	0.509
RM 221	2	0.80	1.471	0.500	0.00	0.328	0.269
Mean	2.636	0.727	1.759	0.640	0.003	0.387	0.326
SE	0.079	0.020	0.072	0.035	0.001	0.022	0.018
RM6641	2	0.95	1.105	0.199	0.00	0.097	0.091
RM 279	2	0.88	1.280	0.377	0.05	0.224	0.091
RM3562	3	0.45	2.740	1.049	0.00	0.651	0.559
RM60	2	0.65	1.835	0.647	0.00	0.467	0.352
RM1388	3	0.45	2.817	1.067	0.00	0.662	0.572
RM471	2	0.85	1.342	0.423	0.00	0.262	0.223
RM17467	3	0.70	1.869	0.819	0.00	0.477	0.420
RM 317	2	0.85	1.342	0.423	0.00	0.262	0.223
RM 187	2	0.85	1.342	0.423	0.00	0.262	0.223
RM 3322	2	0.90	1.220	0.325	0.00	0.185	0.164
RM 585	4	0.50	2.740	1.142	0.00	0.651	0.573
RM 20236	2	0.90	1.220	0.325	0.00	0.185	0.164
RM 7434	3	0.78	1.578	0.652	0.05	0.376	0.303
RM2126	2	0.90	1.220	0.325	0.00	0.185	0.164
RM 253	3	0.55	2.151	0.845	0.00	0.549	0.436
RM217	2	0.90	1.220	0.325	0.00	0.185	0.164
RM434	3	0.85	1.361	0.518	0.00	0.272	0.247
RM 481	3	0.70	1.852	0.802	0.00	0.472	0.410
RM11	3	0.55	2.410	0.975	0.00	0.600	0.513
RM 505	3	0.65	1.942	0.791	0.00	0.497	0.406
RM501	3	0.73	1.751	0.749	0.05	0.440	0.347
RM25	3	0.85	1.361	0.518	0.00	0.272	0.247
RM407	3	0.70	1.852	0.802	0.00	0.472	0.410
RM3481	2	0.95	1.105	0.199	0.00	0.097	0.091
RM3395	3	0.90	1.227	0.394	0.00	0.190	0.177
RM228	3	0.85	1.361	0.518	0.00	0.272	0.247
RM590	2	0.80	1.471	0.500	0.00	0.328	0.269
RM591	3	0.70	1.852	0.802	0.00	0.472	0.410
RM 26063	4	0.60	2.381	1.089	0.00	0.595	0.438
RM21	2	0.95	1.105	0.199	0.00	0.097	0.091
RM27601	3	0.90	1.227	0.394	0.00	0.190	0.177
R1M7	2	0.85	1.342	0.423	0.00	0.262	0.223
R1M30	3	0.45	2.597	1.010	0.00	0.631	0.534
Mean	2.636	0.727	1.759	0.640	0.003	0.387	0.326
SE	0.079	0.020	0.072	0.035	0.001	0.022	0.018

Na: Number of different alleles amplified; MAF: Major allele frequency; Ne: Number of effective alleles; I: Shannon’s informative index; Ho: Observed heterozygosity; He: Expected heterozygosity; PIC: Polymorphism information content.

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Table 9 SSR markers profile of the twenty indigenous Joha rice cultivars.

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