Table 4 Conservation of heterozygous loci positions across pairs of samples in each group. Some pairs were selected and shown. Full data are presented in Supplementary Table S5.
Group | Plant | Plant | Number of variable sites | Number of conserved heterozygous sites | % |
|---|---|---|---|---|---|
A | No.26 (Shikoku) | No.39 (Kyushu) | 12,344 | 5574 | 45.1 |
No.34 (Shikoku) | No.36 (Shikoku) | 15,116 | 6166 | 40.8 | |
No.35 (Chugoku) | No.39 (Kyushu) | 11,135 | 4961 | 44.5 | |
No.35 (Chugoku) | No.42 (Chugoku) | 17,896 | 6545 | 36.6 | |
No.39 (Kyushu) | No.34 (Shikoku) | 9726 | 5065 | 52.1 | |
No.39 (Kyushu) | No.35 (Chugoku) | 11,015 | 5078 | 46.1 | |
No.42 (Chugoku) | No.34 (Shikoku) | 14,962 | 5987 | 40.0 | |
B | No.2 (Kanto) | No.8 (Chubu) | 6160 | 2810 | 45.6 |
No.2 (Kanto) | No.21 (Tohoku) | 9316 | 3695 | 39.6 | |
No.8 (Chubu) | No.12 (Kanto) | 10,640 | 4336 | 40.7 | |
No.8 (Chubu) | No.27 (Kinki) | 7444 | 3702 | 49.7 | |
No.12 (Kanto) | No.14 (Shikoku) | 22,672 | 10,740 | 47.4 | |
No.14 (Shikoku) | No.15 (Shikoku) | 16,321 | 7997 | 49.0 | |
No.30 (Kanto) | No.31 (Kanto) | 14,445 | 6882 | 47.6 | |
C1 | No.4 (Shikoku) | No.5 (Tohoku) | 11,062 | 1644 | 14.9 |
No.10 (Tohoku) | No.22 (Tohoku) | 10,348 | 4981 | 48.1 | |
No.22 (Tohoku) | No.44 (Kyushu) | 24,017 | 4014 | 16.7 | |
No.33 (Tohoku) | No.43 (Kyushu) | 34,734 | 5058 | 14.6 | |
No.43 (Kyushu) | No.4 (Shikoku) | 19,758 | 2748 | 13.9 | |
No.48 (Kanto) | No.4 (Shikoku) | 7961 | 4030 | 50.7 | |
No.49 (Chubu) | No.4 (Shikoku) | 11,033 | 2402 | 21.8 | |
C2 | No.7 (Chubu) | No.11 (Chubu) | 13,991 | 3218 | 23.0 |
No.7 (Chubu) | No.23 (Chubu) | 15,078 | 3307 | 21.9 | |
No.11 (Chubu) | No.23 (Chubu) | 15,539 | 4533 | 29.2 | |
No.11 (Chubu) | No.24 (Tohoku) | 13,055 | 7026 | 53.8 | |
No.23 (Chubu) | No.24 (Tohoku) | 16,974 | 4967 | 29.3 | |
No.24 (Tohoku) | No.7 (Chubu) | 15,418 | 3432 | 22.2 | |
C3 | No.1 (Kinki) | No.3 (Shikoku) | 13,815 | 5548 | 40.1 |
No.3 (Shikoku) | No.20 (Chugoku) | 20,615 | 3629 | 17.6 | |
No.16 (Kyushu) | No.20 (Chugoku) | 25,155 | 5146 | 20.4 | |
No.18 (Chubu) | No.41 (Kyushu) | 12,343 | 2167 | 17.5 | |
No.37 (Kyushu) | No.45 (Kyushu) | 11,183 | 2933 | 26.2 | |
No.45 (Kyushu) | No.1 (Kinki) | 13,057 | 2782 | 21.3 | |
No.46 (Kyushu) | No.16 (Kyushu) | 25,504 | 6161 | 24.1 | |
C4 | No.6 (Kinki) | No.13 (Kinki) | 24,481 | 3843 | 15.7 |
No.13 (Kinki) | No.28 (Kyushu) | 26,763 | 3199 | 11.9 | |
No.17 (Okinawa) | No.32 (Okinawa) | 12,418 | 5361 | 43.9 | |
No.19 (Chugoku) | No.38 (Kyushu) | 20,175 | 2568 | 12.7 | |
No.29 (Shikoku) | No.47 (Kinki) | 3007 | 131 | 4.3 | |
No.47 (Kinki) | No.6 (Kinki) | 2473 | 136 | 5.4 | |
No.50 (Kyushu) | No.6 (Kinki) | 12,063 | 2425 | 20.1 |
