Table 1 COVID-19 risk variants regulate the expression level of RBPs.

From: Integration of risk variants from GWAS with SARS-CoV-2 RNA interactome prioritizes FUBP1 and RAB2A as risk genes for COVID-19

Chr

Variant

Risk allele

Genomic annotation

p-value

Locus gene

eGENE

A2

B2

C2

1

NC_000001.11:g.77501822T>A

A

Intron

7.64e-07

1.98e-08a

0.0019706

AK5

FUBP1

NC_000001.11:g.77984833C>A

A

Intron

1.17e-06

3.41e-09a

0.00034365

DNAJB4

5

NC_000005.10:g.132422622A>G

A

Intron

2.01e-08a

5.97e-07

0.0048754

IRF1-AS1

RAD50

NC_000005.10:g.132423020T>C

T

Intron

2.01e-08a

3.50e-07

0.0013191

NC_000005.10:g.132424387A>G

A

Intron

3.41e-08a

6.69e-06

0.013389

NC_000005.10:g.132424726A>G

A

Intron

2.01e-08a

1.10e-06

0.0096258

NC_000005.10:g.132424758A>G

A

Intron

3.29e-08a

1.84e-06

0.0048866

NC_000005.10:g.132427482T>C

T

Intron

3.40e-08a

3.32e-07

0.0039825

NC_000005.10:g.132428411A>G

A

Intron

2.84e-08a

3.08e-07

0.0042891

NC_000005.10:g.132441275T>C

C

Intron

1.96e-08a

3.34e-08a

0.001593

NC_000005.10:g.132448315C>T

T

Intron

4.57e-08a

1.96e-08a

0.0021256

NC_000005.10:g.132453764G>A

A

Intron

2.58e-08a

3.76e-08a

0.003704

NC_000005.10:g.132457732dup

TG

Intron

6.33e-09a

2.04e-07

4.07e-05

NC_000005.10:g.132458098T>G

G

Intron

2.62e-08a

2.39e-08a

0.0036656

NC_000005.10:g.132459227dup

TC

Intron

1.27e-08a

1.99e-07

0.00043893

NC_000005.10:g.132462711C>G

G

Intron

3.28e-08a

5.98e-08a

0.0051042

NC_000005.10:g.132463037C>T

T

Intron

4.02e-08a

8.14e-08a

0.0055856

NC_000005.10:g.132463928G>A

A

Intron

3.98e-08a

9.48e-08a

0.0062497

8

NC_000008.11:g.60515641C>T

T

Upstream

5.61e-06

4.81e-08a

3.89e-05

RAB2A

RAB2A

  1. Phenotype A2: critically ill vs. population, Phenotype B2: hospitalized COVID-19 vs. population, and Phenotype C2: COVID-19 vs. population.
  2. ap-value < 5 × 10–8.