Table 5 Distribution of the respiratory microbiome in adult patients admitted to ICU with Influenza A virus pneumonia.
From: Lung microbiome on admission in critically ill patients with acute bacterial and viral pneumonia
Patient | Influenza-1 | Influenza-2 | Influenza-3 | Influenza-4 | Influenza-5 | Mean | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Phylum | Readsa | %b | Readsa | %b | Readsa | %b | Readsa | %b | Readsa | %b | %c |
Actinobacteria | 5542 | 17.1 | 4397 | 19.4 | 840 | 2.2 | 20,173 | 13.7 | 8252 | 23.4 | 15.2 |
Bacteroidetes | 3730 | 11.5 | 2904 | 12.8 | 2354 | 6.0 | 36,739 | 24.9 | 11,651 | 33.0 | 17.6 |
Deinococcus-Thermus | 75 | 0.2 | 0 | ||||||||
Firmicutes | 11,859 | 36.6 | 5479 | 24.2 | 20,668 | 52.9 | 74,647 | 50.6 | 3999 | 11.3 | 35.1 |
Fusobacteria | 0.0 | 337 | 1.5 | 2488 | 6.4 | 683 | 0.5 | 98 | 0.3 | 1.7 | |
Proteobacteria | 11,258 | 34.8 | 8462 | 37.4 | 12,668 | 32.4 | 15,384 | 10.4 | 10,964 | 31.1 | 29.2 |
Spirochaetes | 1058 | 4.7 | 217 | 0.6 | 1.1 | ||||||
Verrucomicrobia | 36 | 0.1 | 0 | ||||||||
Total | 32,389 | 100 | 22,637 | 100 | 39,054 | 100 | 147,626 | 100 | 35,256 | 100 | 100.0 |
