Table 2 Table of functions used to calculate the protein physicochemical properties.
Protein Physicochemical Properties Computation | |||
|---|---|---|---|
ProtParam Module of Biopython package (version 1.79)43 | Peptides (version 0.3.1) python package44 | ||
Function | Used for | Function | Used for |
instability_index | Instability Index | aliphatic_index | Aliphatic Index |
gravy | Hydrophobicity (GRAVY) | hydrophobic_moment | Hydrophobic Moment |
isoelectric_point | Isoelectric Point | ||
molecular_weight | Molecular Weight | ||
charge_at_pH | Charge (at pH 7) | ||
secondary_structure_fraction | Secondary Structure Fraction | ||
aromaticity | Aromaticity | ||
molar_extinction_coefficient | Molar Extinction Coefficient (cysteine|cystine) | ||
