Table 1 Summary statistics of demographic data and phenotypes for C. diff cases and controls selected using the C. diff phenotyping algorithm.

From: Genetic variation in the human leukocyte antigen region confers susceptibility to Clostridioides difficile infection

N

Case

n = 1349

Control

n = 18,512

Overall

n = 19,861

Case–control differences

Site

 Children’s Hospital of Philadelphia

11% (149)

1.4% (265)

2.1% (414)

X2 = 8.64 (P = 3.29 × 10–3)

 Cincinnati Children’s Medical Hospital

1.0% (14)

0.0% (0)

0.1% (14)

X2 = 564.67 (P = 2.20 × 10–16)

 Columbia

5.6% (76)

0.5% (88)

0.8% (164)

X2 = 408.56 (P = 2.20 × 10–16)

 Geisinger

4.2% (57)

4.9% (899)

4.8% (956)

X2 = 1.09 (P = 0.30)

 Kaiser Permanente/UW

4.2% (57)

11% (2128)

11% (2185)

X2 = 67.87 (P = 2.20 × 10–16)

 Mass General Brigham

3.5% (47)

8.8% (1623)

8.4% (1670)

X2 = 45.571 (P = 1.47 × 10–11)

 Mayo Clinic

7.2% (97)

17% (3127)

16% (3224)

X2 = 87.03 (P = 2.20 × 10–16)

 Marshfield

2.4% (32)

4.7% (861)

4.5% (893)

X2 = 15.207 (P = 9.63 × 10–5)

 Mt. Sinai

7.9% (106)

15% (2776)

15% (2882)

X2 = 51.64 (P = 3.29 × 10–3)

 Northwestern

5.6% (76)

2.0% (362)

2.2% (438)

X2 = 78.88 (P = 2.20 × 10–16)

 Vanderbilt

47% (638)

34% (6383)

35% (7021)

X2 = 90.34 (P = 2.20 × 10–16)

Sex (female)

51% (690)

55% (10,232)

55% (10,922)

X2 = 90.34 (P = 2.20 × 10–16)

Median BMI (kg/m2)*

20.8, 25.2, 29.8

24.4, 28.1, 32.9

24.2, 28.0, 32.8

Z = 14.581 (P = 2.20 × 10–16)

Median age*

39.7, 57.3, 70.0

51.1, 64.9, 76.1

50.4, 64.4, 76.0

Z = 14.372 (P = 2.20 × 10–16)

Self-identified ancestry

 American Indian or Alaska Native

0.2% (3)

0.2% (40)

0.2% (43)

X2 = 0.002 (P = 0.96)

 Black or African American

15% (196)

19% (3562)

19% (3758)

X2 = 21.75 (P = 3.10 × 10–6)

 Asian

0.8% (11)

0.8% (142)

0.8% (153)

X2 = 0.04 (P = 0.84)

 Native Hawaiian or other Pacific Islander

0.07% (1)

0.02% (2)

0.02% (3)

X2 = 0.46 (P = 0.50)

 White

75% (1008)

74% (13,716)

74% (14,724)

X2 = 0.26 (P = 0.61)

 Unknown

9.2% (124)

5.0% (933)

5.3% (1057)

X2 = 43.02 (P = 5.42 × 10–11)

 Not reported

0.4% (6)

0.6% (117)

0.6% (123)

X2 = 0.72 (P = 0.40)

Self-identified ethnicity

 Hispanic or Latino

6.0% (81)

4.8% (895)

4.9% (976)

X2 = 3.68 (P = 0.06)

 Not Hispanic or Latino

88% (1193)

92% (17,120)

92% (18,313)

X2 = 28.62 (P = 8.80 × 10–8)

 Unknown

5.6% (75)

2.7% (497)

2.9% (572)

X2 = 37.16 (P = 1.09 × 10–9)

Genetically determined ancestry

 African

17% (235)

21% (3849)

21% (4084)

X2 = 8.75 (P = 3.10 × 10–3)

 Asian

2.4% (32)

1.6% (287)

1.6% (319)

X2 = 5.37 (P = 2.05 × 10–2)

 European

80% (1082)

78% (14,376)

78% (15,458)

X2 = 4.74 (P = 2.95 × 10–2)

Antibiotic exposure (Within 7–62 days prior to index date)

 High risk

28% (376)

21% (3832)

21% (4208)

X2 = 38.74 (P = 4.85 × 10–10)

 Moderate risk

11% (147)

26% (4838)

25% (4985)

X2 = 155.29 (P = 2.20 × 10–16)

 Low risk

1.9% (25)

1.5% (284)

1.6% (309)

X2 = 0.84 (P = 0.36)

 No exposure

59% (801)

52% (9558)

52% (10,359)

X2 = 30.233 (P = 3.83 × 10–8)

Cancer (First record to index date + 7 days)

20% (272)

14% (2520)

14% (2792)

X2 = 44.654 (P = 2.35 × 10–11)

Chemotherapy (before 180 days prior to index date, after 7 days following index date)

20% (270)

12% (2263)

13% (2533)

X2 = 68.60 (P = 2.20 × 10–16)

Diabetes mellitus (Ever)

24% (326)

25% (4700)

25% (5026)

X2 = 0.99 (P = 0.32)

HIV (Ever)

3.0% (44)

2.0% (302)

2.0% (346)

X2 = 19.52 (P = 9.94 × 10–6)

Nursing home status (within 90 days prior to index date)

11% (147)

2.0% (393)

3.0% (540)

X2 = 365.97 (P = 2.20 × 10–16)

Corticosteroid medications (within 21 days prior to index date)

17% (227)

10% (1848)

10% (2075)

X2 = 62.96 (P = 2.11 × 10–15)

Transplant medications (first record to index date + 7 days)

19% (250)

6.0% (1059)

7.0% (1309)

X2 = 335.23 (P = 2.20 × 10–16)

  1. Significant differences between case and control distributions (as determined by chi-squared tests for binary variables and two-sided Z-tests for continuous variables) are shown in bold.
  2. *The three numbers for body mass index (BMI) and age represent the 25th, 50th and 75th quartiles of the distribution.