Figure 3 | Scientific Reports

Figure 3

From: Population genomics reveals how 5 ka of human occupancy led the Lima leaf-toed gecko (Phyllodactylus sentosus) to the brink of extinction

Figure 3The alternative text for this image may have been generated using AI.

Genetic population structure of Phyllodactylus sentosus in Lima. (a) Discriminant analysis of principal components (DAPC), the axes represent the first two discriminant components. (b) STRUCTURE results from 3737 SNPs, with K = 4. (c) STRUCTURE results from 15,816 SNPs, with K = 6. Group P includes the Puruchuco and Pachacamac samples. Group N2 corresponds to samples from Paraíso, Mulería, UNI and one from SMP. Group N1 includes samples from Tambo Inga, Garagay and one from SMP (San Martin de Porres). (d) Map of the evaluated localities and the average of the coefficients of individual membership to genetic groups in each population from the STRUCTURE analysis with 15,816 SNPs. The size of the pie charts indicates the sample size. Altitudinal relief is represented in gray lines (altitudes higher than 25 m). Map created in ArcGIS 10.3. Free vector data from https://www.geogpsperu.com/2014/03/base-de-datos-peru-shapefile-shp-minam.html.

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