Table 2 Pan-rodent Ppia and viral target multiplex assay primer sequences.

From: Optimal reference genes for RNA tissue analysis in small animal models of hemorrhagic fever viruses

Multiplex assay primer sequences

Oligo name

Primer sequence (5′-3′)

Conc. (µM)

Pan_Ppia_Fwd

CCCACCGTGTTCTTCGAC

400

Pan_Ppia_Rev

TCCTTTCTCTCCAGTGCTCAG

400

Pan_Ppia_Prb

GAGCCCTTGGGCCGCGTCTC

200

CCHFV_Fwd

CAGGACATGGACATAGTGGC

400

CCHFV_Rev

ATTGCCCTTGACGTTGTAGG

400

CCHFV_Prb

CCCTTGTTGGCAAGCAATCCC

200

NiV_Fwd

CTGGTCTCTGCAGTTATCACCATCGA

400

NiV_Rev

ACGTACTTAGCCCATCTTCTAGTTTCA

400

NiV_Prb

CAGCTCCCGACACTGCCGAGGAT

200

LASV_Fwd

GGAAGCCACAGAAAGCTGAC

400

LASV_Rev

GGAGTGCATCAATGACAGCA

400

LASV_Prb

AAATCCCTGCAGTCGGCAGG

200

  1. GenBank accession numbers used to produce a consensus sequence for designing primers and probes against Ppia from multiple rodent species were NM_008907 (mouse), XM_005086775 (hamster), and XM_003465805 (guinea pig). Primer sequences are indicated in the 5′–3′ direction. The final concentration (conc.) of each individual primer or probe per reaction is indicated in micromolar (μM).