Table 5 Agreement between MCSeEd and qRT-PCR results.
From: Genome-wide epigenetic modifications in sports horses during training as an adaptation phenomenon
Gene | Comparison | MCSeEd outcome | RT-qPCR outcome | Agreement |
|---|---|---|---|---|
AP5Z1 | T30 vs. T0 | N.S. | Down-regulation | |
T90 vs. T0 | De-methylation | Up-regulation | Yes | |
T90 vs. T30 | De-methylation | Up-regulation | Yes | |
ARFGAP2 | T30 vs. T0 | N.S. | Down-regulation | |
T90 vs. T0 | De-methylation | N.S. | ||
T90 vs. T30 | De-methylation | Up-regulation | Yes | |
EVI5 | T30 vs. T0 | N.S. | N.S. | |
T90 vs. T0 | De-methylation | N.S. | ||
T90 vs. T30 | De-methylation | N.S. | ||
GRID1 | T30 vs. T0 | Methylation | N.S. | |
T90 vs. T0 | De-methylation | N.S. | ||
T90 vs. T30 | N.S. | N.S. | ||
LHX1 | T30 vs. T0 | Methylation | N.S. | |
T90 vs. T0 | N.S. | N.S. | ||
T90 vs. T30 | N.S. | N.S. | ||
RADIL | T30 vs. T0 | N.S. | Down-regulation | |
T90 vs. T0 | De-methylation | N.S. | ||
T90 vs. T30 | De-methylation | Up-regulation | Yes | |
ATP2A3 | T30 vs. T0 | Methylation | Down-regulation | Yes |
T90 vs. T0 | Methylation | N.S. | ||
T90 vs. T30 | N.S. | Up-regulation | ||
RGS19 | T30 vs. T0 | Methylation | Down-regulation | Yes |
T90 vs. T0 | N.S. | N.S. | ||
T90 vs. T30 | N.S. | Up-regulation | ||
SCAND1 | T30 vs. T0 | N.S. | N.S. | |
T90 vs. T0 | De-methylation | Up-regulation | Yes | |
T90 vs. T30 | De-methylation | N.S. | ||
TTC7A | T30 vs. T0 | N.S. | Down-regulation | |
T90 vs. T0 | N.S. | N.S. | ||
T90 vs. T30 | De-methylation | Up-regulation | Yes |
