Table 1 Statistics of the Siamese (SED) and Burmese (BED) Eld’s deer genomes.
SED | BED | ||||
|---|---|---|---|---|---|
PacBio long-read assembly | Illumina short-read assembly | SSPACE-LongRead hybrid assembly + PacBio contigs | MGI short-read assembly | RagTag scaffolding | |
N50 contig/scaffold size (bases) | 21,876,177 | 14,321 | 24,616,240 | 10,634 | 23,319,789 |
L50 contig/scaffold number | 33 | 46,339 | 28 | 70,177 | 27 |
Assembly size (bases) | 2,712,019,647 | 1,178,002 | 2,484,241,219 | 2,838,198,300 | 2,324,991,452 |
Number of contigs/scaffolds | 2552 | 360,490 | 284 | 3,509,301 | 12,762 |
Number of contigs/scaffolds ≥ 1 Kbp | 2552 | 284,266 | 284 | 272,907 | 12,756 |
Number of contigs/scaffolds ≥ 10 Kbp | 2535 | 74,107 | 279 | 0 | 1202 |
Number of contigs/scaffolds ≥ 10 Mbp | 0 | 0 | 77 | 0 | 68 |
Longest contig/scaffold (bases) | 69,907,081 | 242,553 | 69,955,205 | 155,293 | 65,698,769 |
Number of Ns | 0 | 0 | 17,942,519 | 2,957,114 | 28,963,822 |
GC content (%) | 41.6 | 41.57 | 41.58 | 43 | 41.64 |
BUSCO evaluation (% completeness) | 92.4 | 90 | |||
