Table 2 Biotypes of the DEGs observed in the control and the ACD patient cohorts. Biotypes definitions are available at https://ensembl.org/info/genome/genebuild/biotypes.html.
From: Music compensates for altered gene expression in age-related cognitive disorders
Biotype | Controls | ACD patients | ||||
|---|---|---|---|---|---|---|
n | nUR | nDR | n | nUR | nDR | |
IG C gene | 2 | 2 | – | – | – | – |
IG V gene | 1 | – | 1 | 5 | 1 | 4 |
IG V pseudogene | 1 | 1 | – | – | – | – |
lncRNA | 140 | 81 | 59 | 243 | 60 | 183 |
miRNA | 1 | 1 | – | – | – | – |
Misc RNA | 3 | 2 | 1 | 9 | – | 9 |
Mt rRNA | 1 | – | 1 | – | – | – |
Processed pseudogene | 37 | 21 | 16 | 52 | 12 | 40 |
Protein coding | 921 | 392 | 529 | 2,192 | 1,204 | 988 |
rRNA pseudogene | – | – | – | 2 | – | 2 |
snoRNA | 1 | 1 | – | – | – | – |
snRNA | 4 | 1 | 3 | 3 | 1 | 2 |
TEC | 14 | 9 | 5 | 32 | 1 | 31 |
TR C gene | – | – | – | 2 | 2 | – |
TR J gene | 1 | 1 | – | 2 | 2 | – |
TR V gene | – | – | – | 12 | 12 | – |
Transcribed processed pseudogene | 2 | 1 | 1 | 11 | 3 | 8 |
Transcribed unitary pseudogene | 3 | 3 | – | 4 | 2 | 2 |
Transcribed unprocessed pseudogene | 11 | 9 | 2 | 20 | 12 | 8 |
Translated processed pseudogene | – | – | – | 1 | 1 | – |
Unitary pseudogene | – | – | – | 2 | – | 2 |
Unprocessed pseudogene | 4 | 3 | 1 | 9 | 1 | 8 |
No data | 1 | – | 1 | 4 | 1 | 3 |
Total | 1,148 | 528 | 620 | 2,605 | 1,315 | 1,290 |
