Figure 1

Jupiter consistency plot showing genome alignment between the reindeer assembly and cattle reference genome. The top 37 scaffolds (all above 10 Mb) represented 95% of the reindeer assembly and covered the entire 30 (29 autosomes and Chr X) chromosomes of the cattle reference genome. Coloured bands represent synteny between two genomes, and the crossing lines indicate possible genomic rearrangements or break points in the scaffolds.