Figure 3
From: Species-specific SNP arrays for non-invasive genetic monitoring of a vulnerable bat
Threshold of allelic mismatch number to call Macroderma gigas scats from the same individuals with amplification rate above 90% for loci and 80% for scats. (a) Graph of different numbers of SNP mismatches allowed and numbers of group assigned to genotypes. (b) Misassignment graph (h = 1) demonstrates the frequency of pairwise allelic mismatches of raw genotypes where both samples have genotypes. The red and blue highlights represent SNP differences between faecal samples from ‘within’ and ‘between’ groups or putative individuals respectively. The red and blue dashed lines represent the upper 0.995 percentile and lower 0.005 percentile respectively. (c) Heatmap of pairwise allelic mismatches between all scats. Scats are clustered based on their similarity. A lower number of mismatches presents blue and a higher number of mismatches presents in yellow.
