Table 2 List of identified DEGs between the study groups.

From: Glomerular spatial transcriptomics of IgA nephropathy according to the presence of mesangial proliferation

Groups

Directions

DEGs

M0/Control

Up

TCF21

Down

ATF3, CDKN1A, CSPG4, DUSP1, EGR1, FOS, FOSL2, JUNB, KLF2, KLF4, NR4A1, RGS2, RHOB, TSC22D1, ZFAND5, ZFP36

M1/M0

Up

BGN, CD81, COL18A1, COL4A1, CTNNB1, ECM1, ENG, FLNA, GJA5, H4C5, HEG1, HSPG2, IGFBP7, ITGB1, LRRC32, MSN, PGRMC2, RCAN1, S100A6, SERINC1, SGK1, TCF4, VCAM1, ZFP36L1

Down

BAGE5, DEFB134, FAM236B, GOLGA6L6, KRTAP5-1, REN, TBC1D3C, USP17L3

M1/Control

Up

ACTN1, AKR1A1, APLP2, APOE, ATP5F1A, ATP5IF1, ATP5PF, BCAM, BMP2, BST2, CD151, CD9, CDC42EP3, CDIPT, CFH, CGNL1, CNBP, DAD1, DAG1, DSP, EFEMP2, ESD, FMNL3, FRZB, GAS2, GLS, GLYAT, GNS, H4C5, IGFBP7, ITGA3, ITGAV, ITGB1, ITGB3, ITIH5, ITM2B, KLK6, LAMP2, LAPTM4A, LDHB, LRP2, MACF1, MYH10, MYL12B, MYL6, MYL9, MYOF, NDRG1, NDRG2, NDUFS5, NFE2L1, PARK7, PLXNB1, PRDX1, PTPRM, PTTG1IP, RAB2A, S100A6, SELENOF, SERINC1, SETD3, SH3BGRL2, SLC12A4, SLC22A8, SLC25A6, SORT1, SPATS2L, SULF1, TCF21, THBS1, THSD7A, THY1, TMED3, TNFRSF21, TPM1, VDAC2, XPNPEP2,

Down

ATF3, BAGE5, CEBPB, CEBPD, CHRNB4, CSRNP1, DIO3, DUSP1, EGR1, F2RL3, FABP5, FAM236B, FOS, FOXD4L5, GAGE1, GOLGA6L6, HTRA4, IGHG2, IGKC, JUN, JUNB, JUND, KLF2, KLF4, KRTAP10-3, KRTAP5-1, MAPK6, MRGPRG, MYEOV, NR4A1, NR4A3, NUTM2A, OTOP1, PRAC2, RASD1, REN, RHOB, RRP8, SERPINE1, SIK1, SLC35G4, SPDYE5, TAS1R3, TBC1D3C, TP53TG3B, ULBP1, USP17L11, USP17L12, USP17L15, USP17L17, USP17L3, UTF1, XCL1, ZFP36, ZNF138

  1. DEGs with false discovery rate < 0.1 are presented in the table.