Table 2 Input parameters for pre-processing workflow in Fiji for pixel-based cell counting.

From: Comparison between a deep-learning and a pixel-based approach for the automated quantification of HIV target cells in foreskin tissue

Function

Input parameter

Epidermis

Dermis

Nuclei

CD3

CD4

CCR5

Nuclei

CD3

CD4

CCR5

Subtract background

Rolling ball radius

10

14

12

10

25

15

15

15

Minimum filter

Radius

0

2

1

0.5

2

2.5

1.5

1.5

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