Table 2 Genetic analysis of Thai CBuV and reference viruses.
From: First detection and genetic characterization of canine bufavirus in domestic dogs, Thailand
Virus | Species | Accession number | Gene | ||||||
|---|---|---|---|---|---|---|---|---|---|
NS1 | VP1 | VP2 | |||||||
Conserved replication initiator motifs | Walker loop [GXXXXGK(T/S)] ATP or GTP binding motifs | PLA2 | |||||||
Ca2 + binding loop (YXGXGYXGXR, YXGXF) | Catalytic center HDXXY | D | Glycine–rich sequence GGGGGGGSGVG | ||||||
This study | |||||||||
CU_FS53 | Dog | OQ730240 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS70 | Dog | OQ730241 | N/A | N/A | N/A | N/A | N/A | N/A | GGGGGGGSGVG |
CU_FS231 | Dog | OQ730242 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS232 | Dog | OQ730243 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS235 | Dog | OQ730244 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS236 | Dog | OQ730245 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS20141 | Dog | OQ730246 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS20932 | Dog | OQ730247 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS22734 | Dog | OQ730248 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS23266 | Dog | OQ730249 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS26352 | Dog | OQ730251 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS26336 | Dog | OQ730252 | N/A | N/A | N/A | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS26340 | Dog | OQ730253 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS26359 | Dog | OQ730254 | N/A | N/A | N/A | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS28678 | Dog | OQ730255 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS28683 | Dog | OQ730256 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS28696 | Dog | OQ730257 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CU_FS28961 | Dog | OQ730258 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
Reference | |||||||||
ITA/2015/297 | Dog | MF198244 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
HUN/2012/22 | Dog | MF198245 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CBuV-88 | Dog | MH645362 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
GXNN02-2018 | Dog | MK404087 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CaBuV/62/2017 | Dog | MT154050 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
HUN/2012/126 | Dog | MF198246 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CaBuV/9AS/2005/ITA | Dog | MT154051 | GLHFHVLLQ | IVRYFLIKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
CaBuV/35/2016/ITA | Dog | MT154052 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVV |
AH-001 | Dog | MT542982 | GLHFHVLLQ | IIRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
AH-002 | Dog | MT542983 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
AH-003 | Dog | MT577645 | GLHFHVLLQ | IIRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
Henan44 | Dog | MT364252 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
Henan38 | Dog | MT364251 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
NWT-W25 | Dog | OK546094 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
NWT-W116 | Dog | OK546096 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
Human and primate | |||||||||
BF.7 NS1 | BuV-1 | JX027295 | GLHIHVLVC | IANYFLIKKP | GPASTGKS | YLGPF | HDLEY | D | GGGGGGGSGVG |
BF.96 | BuV-1 | JQ918261 | GLHIHVLVC | IANYFLIKKP | GPASTGKS | YLGPF | HDLEY | D | GGGGGGGSGVG |
BJ13 | BuV-1 | KM580347 | GLHIHVLVC | IANYFLIKKP | GPASTGKS | YLGPF | HDLEY | D | GGGGGGGSGVG |
BF.39 | BuV-2 | JX027297 | GLHIHVLVC | IANYFLIKKP | GPASTGKS | YLGPF | HDLEY | D | GGGGGGGSGVG |
BTN-109 | BuV-3 | AB847988 | GLHIHVLVC | IANYFLIKKP | GPASTGKS | YLGPF | HDLEY | D | GGGGGGGSGVG |
BTN-310 | BuV-3 | AB847989 | GLHIHVLVC | IANYFLIKKP | GPASTGKS | YLGPF | HDLEY | D | GGGGGGGSGVG |
AHP-740 | BuV-3 | AB982222 | GLHIHVLVC | IANYFLIKKP | GPASTGKS | YLGPF | HDLEY | D | GGGGGGGSGIG |
BF.86 | Primate | JX027296 | GLHIHVLVC | IANYFLIKKP | GPASTGKS | YLGPF | HDLEY | D | GGGGGGGSGVG |
Bat | |||||||||
ZM38 | Bat | AB937988 | GLHIHLLLQ | IFNYFLTKEI | GPASTGKS | YLGPG | HDLAY | D | GGGGGGGSGVG |
Bat Mr-PV | Bat | KC154060 | GLHFHVLLQ | ICHYFLKKQI | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
Bat Ms-PV | Bat | KC154061 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
BtBV/V7/HUN/2013 | Bat | KR078344 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GGGGGGGSGVG |
MAG12-57 | Bat | LC085675 | GLHFHVLLQ | IVRYFLTKQP | GPASTGKS | YLGPG | HDLEY | D | GVGGAGGGGVG |
Porcine | |||||||||
GD015 | Porcine | MK279317 | N/A | N/A | N/A | YLGPG | HDLEY | D | GVSGGAGGGGVG |
GD030 | Porcine | MK279318 | N/A | N/A | N/A | YLGPG | HDLEY | D | GVSGGAGGGGVG |
GDHY-1 | Porcine | MK279319 | N/A | N/A | N/A | YLGPG | HDLEY | D | GASGGGGGGGVG |
SY-2015 | Rat | NC 028650 | N/A | N/A | N/A | YLGPG | HDLAY | D | GGGGGGGSGVG |
