Table 1 Identified resistance to antibiotics used by patients before and one week after HSCT. Resistance genes carried by bacteria to listed antibiotics used by patients.

From: Gut diversity and the resistome as biomarkers of febrile neutropenia outcome in paediatric oncology patients undergoing hematopoietic stem cell transplantation

Antibiotics

Gene

Microorganism

D-7

Trimethoprim/sulfamethoxazole

dfrG

Enterococcus faecium

Enterococcus faecalis

dfrA14

Salmonella enterica

Klebsiella pneumoniae

sul2

Salmonella enterica

Klebsiella pneumoniae

Bacteroides fragilis

dfrA1

Salmonella enterica

Amikacin

aac(6′)-aph(2″)

Enterococcus faecium

Piperacilline/tazobactam

blaTEM-116

unknown

blaOXY-6-2

Klebsiella oxytoca

blaTEM-1C

Escherichia coli

blaSHV-1

Klebsiella pneumoniae

blaLEN13

Klebsiella variicola

D + 7

Amikacin

aph(3')-III

Enterococcus faecium

aac(6′)-aph(2″)

Staphylococcus hominis

Enterococcus faecium

aac(6')-Ib-cr

Klebsiella pneumoniae

Teicoplanin

VanHAX

Enterococcus faecalis

Piperacilline/tazobactam

blaTEM-116

unknown

Escherichia coli

blaSHV-1

Klebsiella pneumoniae

blaTEM-1B

Escherichia coli

blaCTX-M-1

Escherichia coli