Table 1 Main quality parameters of C. waltheriae and T. diversipes assemblies.

From: Decoding bee cleptoparasitism through comparative transcriptomics of Coelioxoides waltheriae and its host Tetrapedia diversipes

Metric

C. waltheriae

T. diversipes

Total transcripts assembled

87,358

17,866a

40,796b

Number of clustered SuperTranscriptsc

18,208

11,998

SuperTranscripts ≥ 1000 nt

10,195

8051

p fragments mappedd

0.93176

0.86625

p bases uncoverede

0.0328

0.05047

Transrate optimal scoref

0.5904

0.50711

Complete BUSCOs (%)

93.4

88.5

Missing BUSCOs (%)

4.1

8.2

  1. aNumber of transcripts obtained after the reference-based assembly.
  2. bNumber of transcripts obtained after the reference guided de novo assembly.
  3. cAfter removing contaminating sequences.
  4. dProportion of reads pairs that mapped successfully.
  5. eProportion of bases that were not covered by any read.
  6. fThis discrete score represents the accuracy and completeness of the assembly based on the assessment of alignments between contigs and reads. The minimum score is 0, while the maximum is 1.0. For a description of the components used in the calculation of this metric, see Smith-Unna et al.38.
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