Figure 1

Maximum likelihood core genome phylogeny of M. fleurettii, M. lentus, M. sciuri, M. vitulinus, S. gallinarum, and S. nepalensis using 449 publicly available assemblies and five genome assemblies from this study indicated with red taxon labels (excluding the partial S. gallinarum genome). Clades are coloured according to species. The phylogenetic tree is constructed from a total of 5,395 SNP sites across the core genomes of 454 assemblies using an ultrafast bootstrap value of 1000.