Table 1 The sizes of haplotype phasing errors for the three methods under different gamete counts.
From: Haplotype-resolved assembly of auto-polyploid genomes via combining Hi-C and gametic data
Number of gametes | ALLHiC (bp) | Gametic data-based method (bp) | PolyGH (bp) |
|---|---|---|---|
200 | 1,850,361,580 | 729,272,316 | 503,735,616 |
220 | 1,850,361,580 | 636,592,278 | 330,587,256 |
240 | 1,850,361,580 | 418,703,263 | 232,918,845 |
260 | 1,850,361,580 | 393,244,925 | 230,009,472 |
280 | 1,850,361,580 | 385,034,911 | 225,608,902 |
310 | 1,850,361,580 | 403,906,072 | 225,122,534 |
350 | 1,850,361,580 | 384,581,778 | 222,941,413 |
400 | 1,850,361,580 | 318,393,216 | 204,521,069 |
450 | 1,850,361,580 | 297,187,279 | 198,906,836 |
500 | 1,850,361,580 | 344,942,532 | 195,749,649 |
550 | 1,850,361,580 | 308,872,825 | 186,967,690 |
600 | 1,850,361,580 | 241,210,335 | 169,387,536 |
650 | 1,850,361,580 | 236,203,111 | 159,828,914 |
680 | 1,850,361,580 | 231,364,351 | 146,978,975 |
