Table 4 Summary of each component of the subnetwork. The table is showing heat score and fold change of each component. The status and mRNA expression of the components in expression atlas and Oncomine is also shown.
From: Dysregulated gene subnetworks in breast invasive carcinoma reveal novel tumor suppressor genes
Component | Heat score | Log2 fold change | Expression (RNA-seq data analysis)* | Expression Atlas mRNA | Oncomine mRNA expression | Canonical pathways & p-value | |
|---|---|---|---|---|---|---|---|
SYT2 | 0.0079 | − 1.03 | Down | Down | Down | TR/RXR activation pathway | 3.43E−03 |
SYT9 | 0.0059 | 2.09 | Up | Down | Up | ||
SYT6 | 0.0079 | − 1.44 | Down | Down | Down | ||
NLGN1 | 0.0059 | − 1.93 | Down | – | Down | ||
NLGN3 | 0.0177 | − 1.06 | Down | Down | Down | ||
SYT13 | 0.002 | 5.67 | Up | Down | Up | ||
NRXN1 | 0.0167 | − 2.22 | Down | Down | Down | ||
