Table 3 Prediction of pathogenicity of missense SNPs in MCM6 protein as predicted by MutPred2.
SL | Amino acid variants | MutPred2 score | Molecular mechanisms | P-value |
|---|---|---|---|---|
1 | I123S | 0.937 | Gain of Intrinsic disorder | 0.02 |
Gain of Allosteric site at R124 | 0.01 | |||
Altered Transmembrane protein | 0.02 | |||
2 | R207C | 0.883 | Altered Ordered interface | 0.02 |
Altered Metal binding | 0.04 | |||
Loss of Acetylation at K205 | 0.04 | |||
3 | R222C | 0.915 | Loss of Allosteric site at R222 | 0.0009 |
Altered Ordered interface | 0.0081 | |||
Gain of Loop | 0.0022 | |||
4 | V456M | 0.872 | Altered Metal binding | 0.0034 |
Altered Ordered interface | 0.04 | |||
Loss of Relative solvent accessibility | 0.03 | |||
Loss of Allosteric site at E461 | 0.01 | |||
Loss of Catalytic site at E461 | 0.01 | |||
Altered Transmembrane protein | 0.01 | |||
5 | D463G | 0.938 | Altered Metal binding | 0.00021 |
Altered Ordered interface | 0.05 | |||
Loss of Allosteric site at D463 | 0.0075 | |||
Loss of Relative solvent accessibility | 0.03 | |||
Gain of Catalytic site at E461 | 0.0066 | |||
Gain of Acetylation at K464 | 0.03 | |||
6 | R602H | 0.892 | Loss of Acetylation at K599 | 0.03 |
Altered Disordered interface | 0.04 | |||
Altered DNA binding | 0.03 | |||
7 | R633W | 0.876 | Altered Metal binding | 0.05 |
Gain of Allosteric site at E629 | 0.03 | |||
8 | R658C | 0.842 | Loss of Phosphorylation at T661 | 0.02 |
Gain of Loop | 0.03 | |||
Loss of Acetylation at K654 | 0.0079 | |||
Loss of ADP-ribosylation at R658 | 0.05 | |||
Altered Transmembrane protein | 0.0077 |