Table 6 Sequencing results.

From: Screening of co-expressed genes in hypopharyngeal carcinoma with esophageal carcinoma based on RNA sequencing and Clinical Research

Sample

A1

A2

A3

A4

A5

A6

B1

B2

B3

B4

B5

B6

Raw Reads Number

4.89E + 07

4.65E + 07

3.90E + 07

4.89E + 07

4.94E + 07

4.76E + 07

4.79E + 07

4.83E + 07

4.86E + 07

4.90E + 07

4.93E + 07

4.97E + 07

Raw Bases Number

7.33E + 09

6.97E + 09

5.84E + 09

7.34E + 09

7.41E + 09

7.13E + 09

7.19E + 09

7.24E + 09

7.29E + 09

7.34E + 09

7.40E + 09

7.45E + 09

Clean Reads Number

4.71E + 07

4.39E + 07

3.73E + 07

4.75E + 07

4.70E + 07

4.56E + 07

4.60E + 07

4.64E + 07

4.67E + 07

4.71E + 07

4.74E + 07

4.78E + 07

Clean Reads Rate (%)

96.31

94.48

95.72

97.18

95.26

96.42

92.47

93.2

89.69

96.68

91.79

85.73

Clean Bases Number

7.06E + 09

6.59E + 09

5.59E + 09

7.13E + 09

7.06E + 09

7.17E + 09

6.70E + 09

6.75E + 09

6.97E + 09

6.79E + 09

6.65E + 09

6.51E + 09

Adapter Polluted Reads Rate (%)

3.69

5.46

4.2

2.81

4.74

3.58

7.53

6.8

10.31

3.31

8.12

14.27

Raw Q30 Bases Rate (%)

94.13

92.88

92.38

95.2

94.09

93.46

92.14

94.17

94.9

94.84

93.6

95.72

Clean Q30 Bases Rate (%)

94.02

92.72

92.19

95.14

93.94

93.34

91.79

93.94

94.64

94.76

93.36

95.39

  1. Raw Reads Number: The number of Reads that were originally downloaded.
  2. Raw Bases Number: The number of bases in the original down-loading sequence.
  3. Clean Reads Number: The number of high-quality Reads obtained after filtering.
  4. Clean Reads Rate (%): The proportion of high-quality sequences obtained after filtering out low-quality reads. The higher this value, the better the sequencing quality or library quality.
  5. Clean Bases Number: The number of bases in the filtered high-quality sequence.
  6. Adapter Polluted Reads Rate (%): the proportion of removed reads contaminated by adapters to the total raw reads.
  7. Raw Q30 Bases Rate (%): The proportion of bases with a sequencing quality value greater than 30 (with an error rate of less than 0.1%) in Raw Reads, as a percentage of the total bases (Raw Reads).
  8. Clean Q30 Bases Rate (%): The proportion of bases with a sequencing quality value greater than 30 (error rate less than 0.1%) in Clean Reads, out of the total bases (Clean Reads).
  9. A1–A6 hypopharyngeal carcinoma with esophageal carcinoma.
  10. B1–B6 hypopharyngeal carcinoma.
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