Table 3 Analysis tool of the E12 genome components.

From: Correlation analysis of whole genome sequencing of a pathogenic Escherichia coli strain of Inner Mongolian origin

Tools

Function

GeneMarkS36

Predicted coding genes

Blastn database37

Annotated coding genes

RepeatMasker38

Predicted interspersed nuclear elements (INEs)

Tandem Repeats Finder39

Predicted tandem repeat (TR)

tRNA scan SE40

Predicted non-coding RNAs (ncRNAs)

RNAmmer41

Rfam database42

Island Path-DIOMB43

Predicted genomics islands (GIs)

phiSpy44

Predicted prophage

CRISPRdigger45

Predicted clustered regularly interspaced short palindromic repeat sequences (CRISPR)

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