Table 4 Hypomethylated DMRs overlapping homeobox genes that are only found in one TCGA cancer type.
From: Homeobox and Polycomb target gene methylation in human solid tumors
TCGA cancer | Gene |
|---|---|
BLCA | ISL1, NOBOX |
CESC | HOXA6, HOXA7, HOXA9, HOXC5, POU2F2 |
CHOL | MEIS2 |
ESCA squamous cell | BARHL2, HLX, EN1, HOXD12, HOXD11, HOXD10, HOXD9, HOXD8, GBX2, DLX6, EN2, DRGX, VAX1, EMX2, HMX3, GSX1, IRX3, HOXB7, HOXB8, HOXB9, ARX, RHOXF1 |
LIHC | PAX7, IRX4, PROP1, MNX1, PKNOX2, GSC2 |
THCA | PRRX1, LHX9, PROX1, SIX3, MEIS1, VAX2, CERS6, GSX2, HOPX, HMBOX1, PBX3, ZEB1, HHEX, PITX3, HMX2, PHOX2A, POU6F1, SIX1, SIX4, SEBOX, LHX1, DLX3, TGIF1, TSHZ1, RAX2, CERS4, SIX5, ADNP, PKNOX1, HDX |
UCEC | TGIF2, OTX1, HOXA1, HOXA2, HOXC8 |
