Table 6 GO functional classification statistics.
From: Whole genome sequencing and analysis of the weed pathogen Trichoderma polysporum HZ-31
Ontology | Term | Gene_num | Ratio |
|---|---|---|---|
Biological process | Reproduction | 350 | 2.92 |
Cell killing | 6 | 0.05 | |
Immune system process | 53 | 0.44 | |
Metabolic process | 4789 | 39.91 | |
Cellular process | 5395 | 44.97 | |
Reproductive process | 143 | 1.19 | |
Biological adhesion | 43 | 0.36 | |
Signaling | 447 | 3.73 | |
Multicellular organismal process | 287 | 2.39 | |
Developmental process | 451 | 3.76 | |
Growth | 118 | 0.98 | |
Locomotion | 70 | 0.58 | |
Single-organism process | 3027 | 25.23 | |
Rhythmic process | 14 | 0.12 | |
Positive regulation of biological process | 360 | 3 | |
Negative regulation of biological process | 364 | 3.03 | |
Regulation of biological process | 1511 | 12.59 | |
Response to stimulus | 1492 | 12.44 | |
Localization | 1290 | 10.75 | |
Establishment of localization | 1188 | 9.9 | |
Multi-organism process | 246 | 2.05 | |
Biological regulation | 1701 | 14.18 | |
Cellular component organization or biogenesis | 1395 | 11.63 | |
Cellular component | Extracellular region | 330 | 2.75 |
Cell | 5713 | 47.62 | |
Nucleoid | 18 | 0.15 | |
Membrane | 2222 | 18.52 | |
Virion | 6 | 0.05 | |
Cell junction | 38 | 0.32 | |
Extracellular matrix | 14 | 0.12 | |
Membrane-enclosed lumen | 815 | 6.79 | |
Macromolecular complex | 1411 | 11.76 | |
Organelle | 4475 | 37.3 | |
Extracellular matrix part | 8 | 0.07 | |
Extracellular region part | 40 | 0.33 | |
Organelle part | 2370 | 19.75 | |
Virion part | 1 | 0.01 | |
Membrane part | 1822 | 15.19 | |
Synapse part | 33 | 0.28 | |
Cell part | 5710 | 47.59 | |
Synapse | 36 | 0.3 | |
Symplast | 2 | 0.02 | |
Molecular function | Protein binding transcription factor activity | 78 | 0.65 |
Nucleic acid binding transcription factor activity | 400 | 3.33 | |
Catalytic activity | 4429 | 36.91 | |
Receptor activity | 29 | 0.24 | |
Structural molecule activity | 209 | 1.74 | |
Transporter activity | 692 | 5.77 | |
Binding | 4307 | 35.9 | |
Electron carrier activity | 129 | 1.08 | |
Antioxidant activity | 54 | 0.45 | |
Channel regulator activity | 3 | 0.03 | |
Metallochaperone activity | 7 | 0.06 | |
Enzyme regulator activity | 162 | 1.35 | |
Protein tag | 1 | 0.01 | |
Translation regulator activity | 5 | 0.04 | |
Nutrient reservoir activity | 5 | 0.04 | |
Molecular transducer activity | 60 | 0.5 |