Table 1 Lineage assignments for each of the NMF-predicted lineages from all samples. The predicted lineages were all highly abundant in Ontario when these samples were collected32.

From: Reconstructing SARS-CoV-2 lineages from mixed wastewater sequencing data

Isolate

Lineage

Scorpio call

Scorpio support

Lineage1

BA.2

Omicron (BA.2-like)

0.97

Lineage2

BA.1.1

Omicron (BA.1-like)

0.88

Lineage3

B.1.617.2

Delta (B.1.617.2-like)

0.92

  1. Both Pangolin and Scorpio agree on all three and Scorpio indicates strong support for the predicted lineages (Pangolin does not provide support values)
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