Table 2 Lineage assignments for each of the NMF-predicted lineages from a single run in late June 2022.

From: Reconstructing SARS-CoV-2 lineages from mixed wastewater sequencing data

Isolate

Lineage

Scorpio call

Scorpio support

Lineage1

BA.5.2.1

Omicron (BA.5-like)

0.97

Lineage2

BA.2.12.1

Omicron (BA.2-like)

0.97

  1. The method accurately predicts BA.5 and BA.2 including sub-lineages which have been found in clinical samples with very high scorpio support.
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