Table 2 Transposable elements profiling using three quantification methods in the atena package.
Data set | Tissue types | TE quantification method | ASD vs Ctrl | NV-ASD vs Ctrl | V-ASD vs Ctrl | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Total number (filtered zero counts) | Number of DETEs (p-value < 0.05) | Number of DETEs (adjp-value < 0.05) | Total number (filtered zero counts) | Number of DETEs (p-value < 0.05) | Number of DETEs (adjp-value < 0.05) | Total number (filtered zero counts) | Number of DETEs (p-value < 0.05) | Number of DETEs (adjp-value < 0.05) | |||
Our study | Post-mortem cerebellum tissue | TEtranscripts | 986,307 | 3,059 | 0 | 737,723 | 3,286 | 1 | 644,636 | 2,979 | 21 |
Teloscope | 1,166,508 | 2,625 | 10 | 893,461 | 2,522 | 10 | 777,147 | 2,085 | 38 | ||
ERV | 1,374,293 | 5,073 | 0 | 1,067,906 | 4,538 | 1 | 921,733 | 4,875 | 9 | ||
GSE211154 | Purkinje cells | TEtranscripts | 1,925,296 | 27,554 | 0 | - | - | - | - | - | - |
Teloscope | 1,846,225 | 14,409 | 2 | - | - | - | - | - | - | ||
ERV | 1,627,211 | 2,133 | 1 | - | - | - | - | - | - | ||
