Table 1 Copy number calling results of 15 cancer cell lines and three simulated COLO 829 cancer cell lines with different tumor cell contents.

Cell line WGS

A2058

2.21

33.10

2757.71

2740.17

99.36

COLO 829 T

3.22

37.84

2768.17

2743.39

99.11

HEPG2

2.26

42.04

2783.24

2776.96

99.77

HT115

2.10

35.73

2759.91

2742.70

99.38

KNS81

1.96

45.91

2761.61

2729.79

98.85

LAMA84

3.11

42.52

2788.78

2777.25

99.59

LOVO

2.20

37.91

2760.97

2749.19

99.57

LS513

2.28

31.91

2758.90

2749.62

99.66

MKN74

2.30

42.41

2712.25

2669.85

98.44

MM1S

1.97

42.91

2759.18

2756.67

99.91

MONO-MAC-1

2.09

38.35

2762.58

2744.30

99.34

NCIH69

1.64

40.17

2717.08

2700.69

99.40

OVCAR4

2.99

39.84

2728.81

2685.77

98.42

SW1990

2.68

34.77

2745.19

2735.80

99.66

T47D

2.89

40.32

2766.71

2721.87

98.38

Simulated cell line with normal cell contamination

COLO 829 T 75%

N.A

96.42

2754.77

2651.55

96.25

COLO 829 T 50%

N.A

95.87

2747.81

2455.02

89.34

COLO 829 T 25%

N.A

91.49

2779.28

1726.19

62.11