Table 2 Overview of ASE Gene calling results across three programs in cell lines.
Cell lines | BASE | aScan | MBASED | ASE found in all three programs | ASE found in both BASE and either aSCAN or MBASED |
|---|---|---|---|---|---|
HepG2 (phased SNVs) | 639 | 721 | 364 | 324 | 600 |
HepG2 (Unphased SNVs) | 600 | 495 | 336 | 214 | 455 |
NCIH2122 | 1710 | 2557 | 1191 | 1086 | 1658 |
KNS62 | 1044 | 1516 | 721 | 617 | 1474 |
SW900 | 1362 | 2075 | 956 | 869 | 1328 |
