Table 4 Rhinovirus type diversity measured using Shannon (H) and Simpson (D) diversity indices.
From: Spatio-temporal distribution of rhinovirus types in Kenya: a retrospective analysis, 2014
Site | Number of sequences | Sequences per species | Number of types | Shannon’s diversity (H) | Simpson diversity (G) | ||
|---|---|---|---|---|---|---|---|
RV-A | RV-B | RV-C | |||||
KNH | 63 | 32 | 2 | 29 | 32 | 3.31 | 23.68 |
Nyeri | 57 | 31 | 3 | 23 | 35 | 3.38 | 24.43 |
Mombasa | 87 | 54 | 3 | 30 | 42 | 3.58 | 30.82 |
Kilifi | 96 | 54 | 7 | 35 | 46 | 3.69 | 34.79 |
Kakuma | 23 | 14 | 1 | 8 | 15 | 2.56 | 10.76 |
Dadaab | 13 | 7 | 0 | 6 | 9 | 2.09 | 7.20 |
Nakuru | 103 | 61 | 7 | 35 | 50 | 3.66 | 28.74 |
Siaya | 128 | 90 | 16 | 22 | 56 | 3.79 | 34.66 |
Kakamega | 65 | 49 | 4 | 12 | 33 | 3.29 | 22.59 |
Asembo | 108 | 65 | 14 | 29 | 52 | 3.74 | 34.23 |
Kibera | 60 | 33 | 5 | 22 | 38 | 3.47 | 26.17 |
