Fig. 6

Analysis of the phylogeny and antimicrobial resistance genes in the genome of the Enterobacteriaceae isolates. The maximum likelihood phylogeny was constructed using RAxML and the bootstrap are displayed ranging from black (less confident) to red (high confident) score. The antibiotic class are shown in parenthesis; AGly is aminoglycosides, Bla is β-lactam antibiotics, Fcyn is fosfomycin, Flq is fluoroquinolone, MLS is macrolide, lincosamide, and streptogramin, Phe is phenicol, Sul is sulphonamide, Tet is tetracycline and Tmt is trimethoprim. int denotes the int gene. NA denotes isolates in which the phylogroup or sequence type is not available.