Table 1 Tracked metrics during model testing for each pathology of each tissue type. The first column shows the tissue type and pathology. Columns 2 and 3 are the averaged loss and F1 score for all training runs along with 95% confidence intervals. The remaining columns show the average confusion matrix entries over all training runs.
From: Scalable deep learning artificial intelligence histopathology slide analysis and validation
Testis | Entropy Loss | F-score | TP | FN | FP | TN |
|---|---|---|---|---|---|---|
Ignore | 0.0069 \(\:\pm\:\) 0.001 | 0.9993 \(\:\pm\:\) 0.000 | 2,760 | 1 | 2 | 15,587 |
Atrophy | 0.0383 \(\:\pm\:\) 0.007 | 0.9921 \(\:\pm\:\) 0.001 | 1,281 | 9 | 11 | 17,049 |
Maturation Arrest | 0.0 \(\:\pm\:\) 0.000 | 1.0 \(\:\pm\:\) 0.000 | 312 | 0 | 0 | 18,038 |
Vacuole | 0.0038 \(\:\pm\:\) 0.003 | 0.9945 \(\:\pm\:\) 0.004 | 177 | 1 | 0 | 18,171 |
Prostate | Entropy Loss | F-score | TP | FN | FP | TN |
Ignore | 0.0094 \(\:\pm\:\) 0.001 | 0.9997 \(\:\pm\:\) 0.000 | 68,621 | 25 | 10 | 62,249 |
Atrophy | 0.0600 \(\:\pm\:\) 0.005 | 0.9830 \(\:\pm\:\) 0.001 | 6,562 | 132 | 95 | 124,116 |
Collapsed Prost | 0.0026 \(\:\pm\:\) 0.000 | 0.9988 \(\:\pm\:\) 0.000 | 4,132 | 5 | 4 | 126,763 |
Hyperplasia | 0.0035 \(\:\pm\:\) 0.000 | 0.9798 \(\:\pm\:\) 0.001 | 323 | 7 | 5 | 130,569 |
Vacuole | 0.0078 \(\:\pm\:\) 0.001 | 0.9509 \(\:\pm\:\)0.004 | 288 | 20 | 9 | 130,588 |
Female Kidney | Entropy Loss | F-score | TP | FN | FP | TN |
Ignore | 0.0100 \(\:\pm\:\) 0.005 | 0.9996 \(\:\pm\:\) 0.000 | 20,072 | 9 | 6 | 34,254 |
Cyst | 0.0112 \(\:\pm\:\) 0.009 | 0.9946 \(\:\pm\:\) 0.003 | 1,610 | 8 | 9 | 52,714 |
Reduced Glomeruli | 0.0159 \(\:\pm\:\) 0.003 | 0.9675 \(\:\pm\:\) 0.007 | 373 | 15 | 9 | 53,944 |
Thickened Bowmans | 0.0097 \(\:\pm\:\) 0.003 | 0.9695 \(\:\pm\:\) 0.009 | 244 | 7 | 7 | 54,083 |
Male Kidney | Entropy Loss | F-score | TP | FN | FP | TN |
Ignore | 0.0322 \(\:\pm\:\) 0.001 | 0.9986 \(\:\pm\:\) 0.000 | 26,369 | 38 | 35 | 52,490 |
Cyst | 0.0455 \(\:\pm\:\) 0.004 | 0.9943 \(\:\pm\:\) 0.001 | 9,030 | 49 | 54 | 69,798 |
Reduced Glomeruli | 0.0308 \(\:\pm\:\) 0.004 | 0.9597 \(\:\pm\:\) 0.004 | 834 | 35 | 35 | 78,028 |
Thickened Bowmans | 0.0352 \(\:\pm\:\) 0.003 | 0.9913 \(\:\pm\:\) 0.001 | 4,602 | 42 | 38 | 74,250 |
Ovary | Entropy Loss | F-score | TP | FN | FP | TN |
Ignore | 0.0010 \(\:\pm\:\) 0.001 | 1.0 \(\:\pm\:\) 0.000 | 11,767 | 0 | 0 | 11,449 |
Antral Follicle | 0.0 \(\:\pm\:\) 0.000 | 1.0 \(\:\pm\:\) 0.000 | 82 | 0 | 0 | 23,134 |
Antral Follicle wo-oocyte | 0.0198 \(\:\pm\:\) 0.005 | 0.9988 \(\:\pm\:\) 0.000 | 5,606 | 8 | 5 | 17,597 |
Large Cyst | 0.0139 \(\:\pm\:\) 0.003 | 0.9975 \(\:\pm\:\) 0.000 | 1,881 | 4 | 5 | 21,326 |
Preantral Follicle ov | 0.0069 \(\:\pm\:\) 0.005 | 0.9750 \(\:\pm\:\) 0.019 | 89 | 3 | 1 | 23,122 |
Primordial Follicle | 0.0074 \(\:\pm\:\) 0.004 | 0.9917 \(\:\pm\:\) 0.005 | 300 | 0 | 4 | 22,912 |
Small Cyst | 0.0149 \(\:\pm\:\) 0.003 | 0.9939 \(\:\pm\:\) 0.001 | 812 | 5 | 4 | 22,395 |
