Table 5 Hyperparameter values used by the GeneSqueeze algorithm.
From: Lossless and reference-free compression of FASTQ/A files using GeneSqueeze
Hyperparameter | Value |
|---|---|
k_list | [10, 25] |
random_subset | 1% |
EI_threshold | 0.1 |
DI_threshold | 0.5 |
tolerance_threshold | 10 |
max_dict_len | 64 |
top_check | 10 |
\({\eta }^{penalty}\) | 6 |
\(ideal\_len\) | 80 |
sdr_threshold (1st SDR block) | 5 |
sdr_threshold (2nd SDR block) | 10 |
