Table 3 Gene sets enriched in phenotype high.
MSigDB collection | Gene set name | NES | NOM p-val | FDR q-val |
|---|---|---|---|---|
c5.all.v2023.2.Hs.symbols.gmt | KEGG_SPLICEOSOME | 2.15 | 0.000 | 0.000 |
KEGG_DNA_REPLICATION | 2.05 | 0.000 | 0.000 | |
KEGG_BASE_EXCISION_REPAIR | 1.95 | 0.000 | 0.000 | |
KEGG_CELL_CYCLE | 1.91 | 0.000 | 0.000 | |
KEGG_HOMOLOGOUS_RECOMBINATION | 1.91 | 0.000 | 0.000 | |
KEGG_NUCLEOTIDE_EXCISION_REPAIR | 1.91 | 0.000 | 0.000 | |
KEGG_MISMATCH_REPAIR | 1.85 | 0.000 | 0.000 | |
KEGG_RNA_POLYMERASE | 1.81 | 0.000 | 0.000 | |
KEGG_NOTCH_SIGNALING_PATHWAY | 1.49 | 0.003 | 0.018 | |
KEGG_PATHWAYS_IN_CANCER | 1.42 | 0.000 | 0.031 |
