Table 2 Genetic annotation of selected DArT-seq markers, highlighted by GWAS as significantly associated. Two lupin genomes (L. luteus and L. albus) were used for BLAST mapping of DArT-seq markers. Loci directly matching DArT-seq markers are indicated by asterisks, whereas corresponding neighboring loci (if applicable) are listed in row(s) below them.
Marker | L. luteus gene | L. albus gene | Annotation |
|---|---|---|---|
M104942 | N/D | Lalb_Chr14g0365811* | non-coding RNA |
M104942 | N/D | Cluster_73519 | non-coding RNA |
M104942 | N/D | Lalb_Chr14g0365831 | Putative transcription factor bZIP family/TGA2.3-like |
M079035 | LLUT_LOCUS32250* | Lalb_Chr09g0329621* | Putative Zf-FLZ domain-containing protein |
M079035 | N/D | Cluster_49371 | long non-coding RNA |
M102006 | LLUT_LOCUS31495* | Lalb_Chr13g0300951* | Putative pre-mRNA polyadenylation factor Fip1 |
M102006 | LLUT_LOCUS31494 | Lalb_Chr13g0300941 | Putative Ubiquitin domain, replication termination factor 2 RTF2, Zinc finger, RING/FYVE/PHD-type |
M074938 | LLUT_LOCUS17529* | Lalb_Chr02g0146461* | Putative pectinesterase/pectinesterase inhibitor 41 |
M055339 | LLUT_LOCUS4667* | Lalb_Chr03g0032501* | Unknown/hypothetical protein |
M055339 | LLUT_LOCUS4666 | Lalb_Chr03g0032521 | Putative transcription factor bZIP/ABA INSENSITIVE 5-like protein 2 |
M055339 | LLUT_LOCUS4656 | Lalb_Chr03g0032571 | Putative transcription factor MYB-HB-like family/GAMYB-like |
M079300 | LLUT_LOCUS36319* | Lalb_Chr01g0012161* | Putative ribosomal protein L34Ae |
M079300 | LLUT_LOCUS36317 | Lalb_Chr01g0012131 | Putative transcription factor C2H2 family/zinc finger protein 1-like |
M065429 | LLUT_LOCUS34632* | Lalb_Chr19g0132221* | Putative cellulose synthase (UDP-forming) chromatin regulator PHD family |
M065429 | LLUT_LOCUS34631 | Lalb_Chr19g0132201 | Putative transcription factor C2H2 family/E3 ubiquitin ligase BIG BROTHER |
M089187 | LLUT_LOCUS18135* | Lalb_Chr06g0173461* | Transcription initiation factor IIB |
M089187 | LLUT_LOCUS22611 | Lalb_Chr21g0316521 | Putative transcription factor MADS-MIKC family/ Agamous-like MADS-box protein AGL18 |
N114410 | LLUT_LOCUS23544* | Lalb_Chr14g0368451* | Putative armadillo-like helical, pumilio, RNA binding domain-containing protein |
N114410 | LLUT_LOCUS23547 | Lalb_Chr14g0368401 | Putative transcription factor MYB-HB-like family/MYB44-like |
M076759 | LLUT_LOCUS17529* | Lalb_Chr02g0146461* | Putative pectinesterase/pectinesterase inhibitor 41 |
M103926 | LLUT_LOCUS4442* | Lalb_Chr03g0034641* | Putative cytochrome P450/MFP1 attachment factor |
M103926 | N/D | Lalb_Chr03g0034631 | mir-393 microRNA precursor family |
M075705 | LLUT_LOCUS5864* | Lalb_Chr11g0074201* | Putative DNA helicase/ATP-dependent DNA helicase Q-like 3 |
M075705 | LLUT_LOCUS5876 | Lalb_Chr11g0074111 | Putative Zf-FLZ domain-containing protein/FCS-Like Zinc finger 13 |
M092420 | LLUT_LOCUS27614* | Lalb_Chr25g0286361* | Putative protein-serine/threonine kinase CMGC-CDK-CRK7-CDK9 family |
M092420 | LLUT_LOCUS11214 | Lalb_Chr25g0286351 | Putative protein kinase PEK-PEK family transcription factor WD40-like family/SPA1-RELATED 4-like |
M103410 | LLUT_LOCUS13188* | Lalb_Chr05g0219221* | Antagonist of like heterochromatin protein 1-like |
