Table 4 4 Details of 13 genes annotated in the KEGG database and information regarding homologous genes in Arabidopsis Thaliana.

From: Integration of GWAS and transcriptome and haplotype analyses to identify QTNs and candidate genes controlling oil content in soybean seeds

QTN Name

Lead SNP

Gene Name a

Chrb

Position (bp)

K_ID

Gene annotation

Homologous gene c

qOC-3-1

AX-157,128,483

Glyma.03G021800

3

2,265,529.2,269,179

K03952

NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8

AT3G06310;AT5G18800

qOC-8-1

AX-116,922,190

Glyma.08G011800

8

942,038.944,988

K01784

UDP-glucose 4-epimerase

AT1G12780(UGE1);AT1G63180(UGE3);AT1G64440(RHD1);AT4G23920(UGE2);AT4G10960(UGE5)

qOC-9-3

AX-157,361,651

Glyma.09G171800

9

39,653,896.39,655,287

K01054

acylglycerol lipase

AT1G18360;AT1G73480

qOC-9-3

AX-157,361,651

Glyma.09G173200

9

39,770,769.39,775,149

K01915

glutamine synthetase

AT5G37600(GSR_1);AT5G35630(GS2);AT3G17820(GLN1.3);AT5G16570(GLN1;4);AT1G48470(GLN1;5);AT1G66200(GSR2)

qOC-11-1

AX-157,229,785

Glyma.11G093200

11

7,061,666.7,066,152

K00392

sulfite reductase (ferredoxin)

AT5G04590(SIR)

qOC-14-1

AX-157,557,823

Glyma.14G218800

14

48,395,238.48,399,660

K00844

hexokinase

AT4G29130(HXK1);AT2G19860(HXK2);AT1G47840(HXK3);AT1G50460(HKL1)AT4G37840(HKL3);AT3G20040(ATHXK4)

qOC-16-3

AX-157,132,706

Glyma.16G213200

16

37,133,392.37,137,981

K01899

succinyl-CoA synthetase alpha subunit

AT5G08300;AT5G23250

qOC-18-1

AX-116,877,759

Glyma.18G025500

18

1,879,117.1,887,759

K22920

UTP—glucose-1-phosphate uridylyltransferase

AT3G56040(UGP3)

qOC-18-1

AX-157,333,937

Glyma.18G027100

18

2,033,839.2,038,697

K05857

phosphatidylinositol phospholipase C, delta

AT4G38530(PLC1);AT5G58670(PLC1);AT3G08510(PLC2);AT5G58700(PLC4);AT5G58690(PLC5);AT2G40116;AT3G55940

qOC-18-1

AX-157,333,937

Glyma.18G027200

18

2,042,578.2,048,191

K05857

phosphatidylinositol phospholipase C, delta

AT4G38530(PLC1);AT5G58670(PLC1);AT3G08510(PLC2);AT5G58700(PLC4);AT5G58690(PLC5);AT2G40116;AT3G55940

qOC-18-1

AX-157,333,937

Glyma.18G027300

18

2,049,280.2,053,959

K05857

phosphatidylinositol phospholipase C, delta

AT4G38530(PLC1);AT5G58670(PLC1);AT3G08510(PLC2);AT5G58700(PLC4);AT5G58690(PLC5);AT2G40116;AT3G55940

qOC-18-1

AX-157,333,937

Glyma.18G028400

18

2,142,745.2,145,667

K08915

light-harvesting complex II chlorophyll a/b binding protein 4

AT5G01530(LHCB4.1);AT3G08940(LHCB4.2);AT2G40100(LHCB4.3)

qOC-18-2

AX-157,083,942

Glyma.18G060600

18

5,457,321.5,469,620

K01103

6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3

AT1G07110(F2 KP)

  1. Bold font indicate the genes which correlate with the fat anabolism in soybean according to our deduction;.
  2. aIndicates the gene which correlates with the QTN (before the gene in the same row);.
  3. bChr: Chromosome;.
  4. cIndicate the homologous genes in Arabidopsis thaliana.
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