Table 4 Codon usage bias parameter information for CDS sequence of P. kingianum MtDNA.
Genes | codon No. | GC1 | GC2 | GC3 | GC_all | ENC | GC3 s |
|---|---|---|---|---|---|---|---|
atp1 | 510 | 57.45 | 42.75 | 35.1 | 45.1 | 51.86 | 35.4 |
atp4 | 196 | 44.9 | 42.86 | 38.27 | 42.01 | 59.85 | 38.8 |
atp6 | 307 | 49.19 | 37.13 | 36.16 | 40.83 | 50.81 | 36.3 |
atp8 | 155 | 38.06 | 37.42 | 43.23 | 39.57 | 50.23 | 44.1 |
atp9 | 75 | 50.67 | 49.33 | 38.67 | 46.22 | 39.61 | 38.7 |
ccmB | 207 | 45.89 | 43.48 | 36.23 | 41.87 | 49.82 | 36.4 |
ccmC | 249 | 46.59 | 48.19 | 36.95 | 43.91 | 50.59 | 37.1 |
ccmFc | 451 | 49 | 44.12 | 42.79 | 45.31 | 55.17 | 43.1 |
ccmFn | 596 | 50.84 | 50 | 41.95 | 47.6 | 54.8 | 42 |
cob | 394 | 50.51 | 41.62 | 34.26 | 42.13 | 53.54 | 34.1 |
cox1 | 528 | 47.73 | 42.8 | 36.74 | 42.42 | 52.92 | 36.9 |
cox2 | 261 | 52.11 | 39.08 | 32.95 | 41.38 | 47.01 | 32.7 |
cox3 | 266 | 52.63 | 45.11 | 34.96 | 44.24 | 52.16 | 34.7 |
matR | 657 | 54.64 | 45.81 | 56.62 | 52.36 | 53.52 | 56.8 |
mttB | 116 | 44.83 | 40.52 | 46.55 | 43.97 | 51.25 | 45.5 |
nad1 | 326 | 53.99 | 43.25 | 30.98 | 42.74 | 51.53 | 31.2 |
nad2 | 489 | 42.74 | 44.38 | 35.38 | 40.83 | 50.92 | 35.2 |
nad3 | 119 | 43.7 | 47.9 | 37.82 | 43.14 | 45.42 | 37.9 |
nad4 | 496 | 46.37 | 43.75 | 36.29 | 42.14 | 53.81 | 37 |
nad4L | 101 | 39.6 | 40.59 | 26.73 | 35.64 | 40.04 | 27.3 |
nad5 | 671 | 44.11 | 44.71 | 35.92 | 41.58 | 51.19 | 36.1 |
nad6 | 260 | 47.31 | 43.08 | 45.38 | 45.26 | 57.91 | 45.2 |
nad7 | 417 | 55.4 | 46.28 | 32.37 | 44.68 | 47.02 | 32.5 |
nad9 | 191 | 51.83 | 42.41 | 33.51 | 42.58 | 52.99 | 34.2 |
rpl16 | 137 | 48.91 | 58.39 | 29.93 | 45.74 | 53.86 | 30.7 |
rpl5 | 189 | 48.15 | 38.1 | 43.39 | 43.21 | 55.85 | 44.3 |
rps1 | 203 | 44.83 | 42.36 | 40.89 | 42.69 | 47.92 | 40.6 |
rps10 | 128 | 42.19 | 38.28 | 39.84 | 40.1 | 59.32 | 40.3 |
rps12 | 126 | 55.56 | 48.41 | 31.75 | 45.24 | 54.36 | 33.6 |
rps13 | 117 | 50.43 | 41.03 | 28.21 | 39.89 | 38.9 | 27.4 |
rps14 | 101 | 44.55 | 46.53 | 38.61 | 43.23 | 59.18 | 38.5 |
rps19 | 91 | 38.46 | 46.15 | 32.97 | 39.19 | 42.91 | 34.1 |
rps2 | 222 | 42.34 | 38.74 | 35.59 | 38.89 | 53.96 | 35.6 |
rps3 | 549 | 45.36 | 40.8 | 44.81 | 43.66 | 58.09 | 45 |
rps4 | 345 | 41.45 | 41.74 | 37.1 | 40.1 | 54.2 | 37.9 |