Table 1 Genetic and clonal diversity estimates based on 1,463 SNPs in 12 populations of S. koreensis.

From: Genotyping-by-sequencing reveals low genetic diversity and peripheral isolation in Southern populations of Sophora koreensis, a Korean endemic shrub

Populations

 

Genetic diversity

Clonal diversity

N

Elev (m)

Population size (m2)

Ho

He

Pi

FIS

Num

Eff

Div

Diu

Eve

Shc

Shu

SA

3

251–561

57,000

0.012

0.133

0.160

0.277

3

3

1

0.667

1

nan*

0.477

SB

7

169–230

124,000

0.016

0.169

0.182

0.424

4

2.579

0.714

0.612

0.645

0.763

0.501

SC

9

361–424

8,000

0.014

0.110

0.117

0.254

1

1

0

0

1

0

0

SD

9

209–458

51,000

0.013

0.138

0.147

0.365

3

1.588

0.417

0.37

0.529

0.462

0.297

SE

9

269–397

50,000

0.010

0.118

0.125

0.279

1

1

0

0

1

0

0

SF

9

343–457

13,000

0.017

0.101

0.107

0.226

1

1

0

0

1

0

0

SG

9

288–424

74,000

0.017

0.154

0.164

0.417

4

2.613

0.694

0.617

0.653

0.65

0.499

SH

4

327–556

16,000

0.013

0.154

0.176

0.337

3

2.667

0.833

0.625

0.889

0.766

0.452

SK

4

287–383

24,000

0.013

0.130

0.149

0.279

2

2

0.667

0.5

1

0.321

0.301

SL

12

289–386

392,000

0.016

0.217

0.226

0.638

10

9

0.97

0.889

0.9

1.487

0.979

SM

6

218–440

77,000

0.016

0.167

0.183

0.399

3

2.571

0.733

0.611

0.857

0.546

0.439

SN

11

258–533

528,000

0.016

0.205

0.215

0.581

8

7.118

0.945

0.86

0.89

1.192

0.877

Mean

   

0.015**

0.150**

0.163

0.373

3.583

3.011

0.581

0.479

0.864

0.562

0.402

  1. SNPs, single nucleotide polymorphisms; N, number of individuals; Ho, observed heterozygosity; He, expected heterozygosity; Pi (π), nucleotide diversity; FIS, inbreeding coefficient; Num: number of genotypes; Eff: number of effective genotypes; Div: genotypic diversity; Diu: Nei’s uncorrected genetic diversity; Eve: evenness (Eff/Num); Shc: Shannon index corrected for sample size; Shu: Shannon-Wiener index.
  2. *Not possible to correct bias (e.g., when all individuals in a population have different genotypes).
  3. **Significantly different after t-test (p < 0.001).
Back to article page