Table 10 Comparison analysis of ACC and DC using ML/DL on DTI datasets.
Dataset | Composition | Model | Accuracy | Precision | Sensitivity | Specificity | F1score | Kappa | MCC | ROC-AUC | MAE | MSE | RMSE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BindingDB_Kd | ACC | DTC | 96.47 | 96.47 | 96.47 | 96.45 | 96.47 | 92.93 | 92.93 | 96.66 | 3.53 | 3.53 | 18.80 |
MLP | 97.13 | 97.14 | 97.13 | 97.91 | 97.13 | 94.26 | 94.27 | 99.15 | 2.87 | 2.87 | 16.95 | ||
RFC | 97.46 | 97.49 | 97.46 | 98.82 | 97.46 | 94.91 | 94.95 | 99.42 | 2.54 | 2.54 | 15.95 | ||
DC | DTC | 96.01 | 96.01 | 96.01 | 95.75 | 96.01 | 92.02 | 92.02 | 96.24 | 3.99 | 3.99 | 19.97 | |
MLP | 96.95 | 96.96 | 96.95 | 97.75 | 96.95 | 93.90 | 93.91 | 99.43 | 3.05 | 3.05 | 17.47 | ||
RFC | 97.09 | 97.12 | 97.09 | 98.22 | 97.09 | 94.18 | 94.21 | 99.31 | 2.91 | 2.91 | 17.06 | ||
BindingDB_Ki | ACC | DTC | 89.68 | 89.68 | 89.68 | 89.92 | 89.68 | 79.36 | 79.36 | 90.70 | 10.32 | 10.32 | 32.13 |
MLP | 89.61 | 89.66 | 89.61 | 91.35 | 89.60 | 79.22 | 79.27 | 96.14 | 10.39 | 10.39 | 32.24 | ||
RFC | 91.69 | 91.74 | 91.69 | 93.40 | 91.69 | 83.39 | 83.44 | 97.32 | 8.31 | 8.31 | 28.82 | ||
DC | DTC | 89.75 | 89.75 | 89.75 | 89.82 | 89.75 | 79.49 | 79.49 | 90.83 | 10.25 | 10.25 | 32.02 | |
MLP | 90.71 | 90.77 | 90.71 | 92.62 | 90.7 | 81.41 | 81.47 | 97.01 | 9.29 | 9.29 | 30.49 | ||
RFC | 91.61 | 91.64 | 91.61 | 92.77 | 91.61 | 83.22 | 83.25 | 97.39 | 8.39 | 8.39 | 28.96 | ||
BindingDB_IC50 | ACC | DTC | 94.12 | 94.12 | 94.12 | 94.04 | 94.12 | 88.23 | 88.23 | 94.77 | 5.88 | 5.88 | 24.26 |
MLP | 94.27 | 94.39 | 94.27 | 96.92 | 94.26 | 88.53 | 88.66 | 98.36 | 5.73 | 5.73 | 23.94 | ||
RFC | 95.40 | 95.41 | 95.40 | 96.42 | 95.39 | 90.79 | 90.81 | 98.97 | 4.60 | 4.60 | 21.46 | ||
DC | DTC | 94.11 | 94.11 | 94.11 | 94.1 | 94.11 | 88.22 | 88.22 | 94.8 | 5.89 | 5.89 | 24.27 | |
MLP | 94.69 | 94.71 | 94.69 | 95.77 | 94.69 | 89.38 | 89.41 | 98.85 | 5.31 | 5.31 | 23.04 | ||
RFC | 95.37 | 95.39 | 95.37 | 96.32 | 95.37 | 90.74 | 90.75 | 98.99 | 4.63 | 4.63 | 21.52 |