Table 1 RCSB Protein Databank (https://www.rcsb.org/) peptide–protein complexes used for our experimental analysis. Cyclization for peptide 5LSO is specified between side-chain particles, and the cyclization of remaining instances all involve main chain particles.
PDB ID | Peptide chain | Cyclization | |A| | \(|A^s|\) | |P| |
|---|---|---|---|---|---|
3WNE | P-K-I-D-N-G | P1-G6 | 6 | 5 | 26 |
5LSO | K-S-R-W-D-E | K1-E6 | 6 | 6 | 34 |
3AV9 | S-A-K-I-D-N-L-D | S1-D8 | 8 | 8 | 28 |
3AVI | S-L-K-I-D-N-M-D | S1-D8 | 8 | 8 | 32 |
3AVN | S-H-K-I-D-N-L-D | S1-D8 | 8 | 8 | 28 |
2F58 | H-I-G-P-G-R-A-F-G-G-G | H1-G10 | 11 | 6 | 49 |
