Table 1 LINC00511 SNPs rs9906859, rs1558535, and rs17780195 allele, chromosome, functional consequence, and MAF info report.

From: Long intergenic non-coding RNA 00511 (LINC00511) genetic variations and haplotype implication for colorectal cancer susceptibility and prognosis

 

LINC00511 SNPs

rs1558535

rs17780195

rs9906859

Allele

[A > T]

[A > G]

[T > A, C]

Allele Flanks

AACAAAACAAAACAAAACAAAACACAAAGACAGTCACAGCAACTACTGAGACGGGAAAGCTATCATGGCATGGTGTGCATGCCTGTATTTTAAAACAGAC

CTCCTCATCCGCCACAACAGGAGACAAAACTGAACCAGGGAGAGTCCAGATGTGGAGACTGCATAGGGCAGGGGCAGCACAAGGACCAGAAGACAGGGGT

GACAGGGGTAAAAAAGAAATGTCTACATGCCCCTTCACCTAGTTTGCTCTTCAAATGTTAGAGACCAACTTACAATCCACCCATGAGAACGGTCTGGATT

[A/T]

[A/G]

[T/A,C]

GATACTTACAGACTATCTTCCGGCTAAACATTTTCCTAAGTTTTGGAAGAAGTCTCAATAAATTGGAACAAGTCTCAATTTTCCTGCTCAGAATTCTCTG

AAAAAGAAATGTCTACATGCCCCTTCACCTAGTTTGCTCTTCAAATGTTAGAGACCAACTTACAATCCACCCATGAGAACGGTCTGGATTTCTCTGTGGT

CTCTGTGGTAAGATAGATCATCCCAAGAGAAAACCCTAAACATAGTGATATTTAAGAGTCTCCAGTGAAAAGTGGAGTCTCTCTCTAAGTGCCCTACAGC

FAM/VIC

T/A

G/A

T/C

Chromosome

17:72,612,450 (GRCh38)

17:70,608,589 (GRCh37)

17:72,628,050 (GRCh38)

17:70,624,189 (GRCh37)

17:72,628,141 (GRCh38)

17:70,624,280 (GRCh37)

Canonical SPDI

NC_000017.11:72,612,449:A:T

NC_000017.11:72,628,049:A:G

NC_000017.11:72,628,140:T:A,

NC_000017.11:72,628,140:T:C

Functional Consequence

Intron variant

Upstream transcript variant,

2KB upstream variant, intron variant

2KB upstream variant, upstream transcript variant, intron variant

MAF

   

1000Genomes

T = 0.360823/1807

G = 0.178315/893(G)

T = 0.472045/2364