Table 1 LINC00511 SNPs rs9906859, rs1558535, and rs17780195 allele, chromosome, functional consequence, and MAF info report.
LINC00511 SNPs | |||
|---|---|---|---|
rs1558535 | rs17780195 | rs9906859 | |
Allele | [A > T] | [A > G] | [T > A, C] |
Allele Flanks | AACAAAACAAAACAAAACAAAACACAAAGACAGTCACAGCAACTACTGAGACGGGAAAGCTATCATGGCATGGTGTGCATGCCTGTATTTTAAAACAGAC | CTCCTCATCCGCCACAACAGGAGACAAAACTGAACCAGGGAGAGTCCAGATGTGGAGACTGCATAGGGCAGGGGCAGCACAAGGACCAGAAGACAGGGGT | GACAGGGGTAAAAAAGAAATGTCTACATGCCCCTTCACCTAGTTTGCTCTTCAAATGTTAGAGACCAACTTACAATCCACCCATGAGAACGGTCTGGATT |
[A/T] | [A/G] | [T/A,C] | |
GATACTTACAGACTATCTTCCGGCTAAACATTTTCCTAAGTTTTGGAAGAAGTCTCAATAAATTGGAACAAGTCTCAATTTTCCTGCTCAGAATTCTCTG | AAAAAGAAATGTCTACATGCCCCTTCACCTAGTTTGCTCTTCAAATGTTAGAGACCAACTTACAATCCACCCATGAGAACGGTCTGGATTTCTCTGTGGT | CTCTGTGGTAAGATAGATCATCCCAAGAGAAAACCCTAAACATAGTGATATTTAAGAGTCTCCAGTGAAAAGTGGAGTCTCTCTCTAAGTGCCCTACAGC | |
FAM/VIC | T/A | G/A | T/C |
Chromosome | 17:72,612,450 (GRCh38) 17:70,608,589 (GRCh37) | 17:72,628,050 (GRCh38) 17:70,624,189 (GRCh37) | 17:72,628,141 (GRCh38) 17:70,624,280 (GRCh37) |
Canonical SPDI | NC_000017.11:72,612,449:A:T | NC_000017.11:72,628,049:A:G | NC_000017.11:72,628,140:T:A, NC_000017.11:72,628,140:T:C |
Functional Consequence | Intron variant | Upstream transcript variant, 2KB upstream variant, intron variant | 2KB upstream variant, upstream transcript variant, intron variant |
MAF | |||
1000Genomes | T = 0.360823/1807 | G = 0.178315/893(G) | T = 0.472045/2364 |