Table 1 Prediction of R-gene domains/motifs from whole genome sequences of cowpea cultivar ‘CDS’ through DRAGO 3 pipeline of plant resistance gene database (PRGdb 4.0).
Domain/motifs | Number of R-genes | Class | Number of R-genes |
|---|---|---|---|
CC-KIN | 29 | C | 12 |
CC-TM-KIN | 72 | CK | 101 |
CC-LRR-KIN-TM | 3 | CL | 19 |
CC-LRR-TM | 16 | CLEC | 1 |
CC-NBS-TM-LRR | 84 | CLECRK | 3 |
CC-TM | 12 | CLK | 3 |
CC-NBS-LRR | 7 | CLYSK | 1 |
CC-NBS-TM-TIR-LRR | 13 | CN | 33 |
CC-NBS-TM-TIR | 1 | CNL | 91 |
CC-NBS-TM | 26 | CNT | 1 |
CC-LRR | 3 | CT | 2 |
CC-LECM-TM-KIN | 3 | CTL | 1 |
CC-LECM-TM | 1 | CTNL | 13 |
CC-TIR | 2 | KIN | 855 |
CC-NBS | 7 | L | 47 |
CC-TM-TIR-LRR | 1 | LEC | 27 |
CC-TM-LYSM-KIN | 1 | LECRK | 96 |
KIN | 169 | LYK | 19 |
LECM | 5 | LYS | 20 |
LECM-TM | 22 | N | 59 |
LECM-TM-KIN | 96 | NL | 77 |
LRR | 47 | RLK | 258 |
LRR-TM | 219 | RLP | 238 |
LRR-TM-KIN | 277 | T | 33 |
LRR-TM-TIR | 1 | TL | 1 |
NBS | 14 | TN | 26 |
NBS-TM | 44 | TNL | 92 |
NBS-LRR-TM | 69 | TRAN | 59 |
NBS-LRR-TM-TIR | 90 | Total | 2188 |
NBS-TIR | 1 | ||
NBS-LRR | 10 | ||
NBS-LRR-TIR | 1 | ||
NBS-TM-TIR | 25 | ||
LYSM | 6 | ||
TIR | 19 | ||
TM | 59 | ||
TM-KIN | 686 | ||
TM-TIR | 14 | ||
TM-LYSM | 14 | ||
TM-KIN-LYSM | 19 | ||
Total | 2188 |
