Table 2 Whole genome prediction of transcription factors and transcription regulators through PlantTFCAT, PlantTFDB v5.0 and iTAK in cowpea.
PlantTFcat | PlantTFDBv5.0 | iTAK | |||
|---|---|---|---|---|---|
Family | Frequency | Family | Frequency | Family | Frequency |
A20-like | 10 | AP2 | 37 | Alfin-like | 10 |
ABTB | 5 | ARF | 32 | AP2/ERF-AP2 | 32 |
AP2-EREBP | 188 | ARR-B | 23 | AP2/ERF-ERF | 152 |
ARF | 32 | B3 | 82 | AP2/ERF-RAV | 2 |
ARID | 12 | BES-1 | 9 | ARID | 17 |
ARID-HMG | 6 | bHLH | 195 | AUX/IAA | 35 |
AS2-LOB | 44 | BRR-BPC | 5 | B3 | 86 |
AUX-IAA | 22 | bZIP | 99 | B3-ARF | 32 |
B3-Domain | 88 | C2H2 | 128 | BBR-BPC | 5 |
BED-type(Zn) | 64 | C3H | 54 | BES1 | 9 |
BES/BZR | 9 | CAMTA | 10 | bHLH | 163 |
bHLH | 209 | CO-Like | 11 | bZIP | 93 |
Bromodomain | 31 | CPP | 6 | C2C2-CO-like | 11 |
BTB-POZ | 34 | DBB | 13 | C2C2-Dof | 43 |
BTB-POZ-MATH | 8 | Dof | 43 | C2C2-GATA | 33 |
bZIP | 129 | E2F/DP | 11 | C2C2-LSD | 6 |
C2C2-CO-like | 36 | EIL | 7 | C2C2-YABBY | 11 |
C2C2-Dof | 43 | ERF | 149 | C2H2 | 143 |
C2C2-GATA | 35 | FAR1 | 65 | C3H | 72 |
C2C2-YABBY | 11 | G2-like | 66 | CAMTA | 9 |
C2H2 | 642 | GATA | 33 | Coactivator P15 | 3 |
C3H | 88 | GeBP | 5 | CPP | 6 |
C3H-WRC/GRF | 30 | GRAS | 64 | CSD | 4 |
CCHC(Zn) | 1187 | GRF | 13 | DBB | 10 |
CG1-CAMTA | 10 | HB-other | 12 | DBP | 2 |
CHROMO-DOMAIN | 60 | HB-PHD | 3 | DDT | 9 |
CW-Zn | 9 | HD-ZIP | 60 | E2F-DP | 10 |
CW-Zn-B3/VAL | 6 | NZZ/SPL | 2 | EIL | 7 |
DDT | 12 | HRT-like | 1 | FAR1 | 64 |
DICER | 0 | HSF | 31 | GARP-ARR-B | 20 |
E2F-DP | 11 | LBD | 44 | GARP-G2-like | 66 |
EIL | 7 | LFY | 1 | GeBP | 5 |
FAR | 65 | LSD | 6 | GNAT | 45 |
FHA-SMAD | 32 | MIKC-MADS | 43 | GRAS | 63 |
FYR | 7 | M-type_MADS | 32 | GRF | 13 |
GAGA-Binding-like | 5 | MYB | 167 | HB-BELL | 16 |
GARP-G2-like | 23 | MYB_related | 98 | HB-HD-ZIP | 55 |
GeBP | 5 | NAC | 99 | HB-KNOX | 19 |
GRAS | 64 | NF-YA | 10 | HB-other | 16 |
GRF | 104 | NF-YB | 22 | HB-PHD | 3 |
Hap2/NF-YA | 10 | NF-YC | 16 | HB-WOX | 21 |
Hap3/NF-YB | 83 | Nin-like | 13 | HMG | 9 |
HD-SAD | 26 | RAV | 3 | HRT | 1 |
HD-ZIP | 22 | SBP | 26 | HSF | 31 |
HMG | 9 | SRS | 11 | IWS1 | 12 |
Homeodomain-LIKE | 15 | STAT | 2 | Jumonji | 33 |
Homeodomain-PHD | 3 | TALE | 35 | LFY | 1 |
Homeodomain-TALE-BEL | 18 | TCP | 26 | LIM | 8 |
Homeodomain-TALE-KNOX | 24 | TRIHELIX | 38 | LOB | 44 |
Homobox-WOX | 123 | VOZ | 3 | LUG | 9 |
HSA | 3 | WHIRLY | 3 | MADS-MIKC | 41 |
HSF-type-DNA-binding | 34 | WOX | 21 | MADS-M-type | 34 |
ISWI | 2 | WRKY | 106 | MBF1 | 3 |
JmjC | 39 | YABBY | 11 | MED6 | 4 |
JmjC-ARID | 2 | ZF-HD | 18 | MED7 | 1 |
JmjN | 13 | NF-X1 | 2 | MTERF | 32 |
JUMONJI | 13 | S1Fa-Like | 2 | MYB | 165 |
Lambda-DB | 5 | SAP | 1 | MYB-related | 91 |
LFY | 1 | Total | 2128 | NAC | 98 |
LIM | 25 | Families | 58 | NF-YA | 10 |
LisH | 38 | NF-YB | 20 | ||
MADS-MIKC | 42 | NF-YC | 16 | ||
MADS-type1 | 33 | OFP | 19 | ||
MYB | 14 | Others | 78 | ||
MYB/SANT | 30 | PHD | 53 | ||
MYB-HB-like | 361 | PLATZ | 17 | ||
MYB-related | 0 | Pseudo ARR-B | 8 | ||
NAM | 99 | RB | 3 | ||
Nin-like | 13 | Rcd1-like | 2 | ||
Nozzle | 2 | RWP-RK | 13 | ||
PAZ-Argonaute | 18 | SAP | 1 | ||
PHD | 194 | SBP | 26 | ||
PLATZ | 17 | SET | 50 | ||
RAV | 3 | SNF2 | 51 | ||
RB | 3 | SOH1 | 1 | ||
RR-A-type | 63 | SRS | 13 | ||
RR-B-type | 11 | STAT | 2 | ||
S1Fa-like | 3 | SW1/SNF-BAF60b | 20 | ||
SAP | 12 | SW1/SNF-SW13 | 6 | ||
SBP | 26 | TAZ | 8 | ||
SET | 44 | TCP | 26 | ||
SNF2 | 58 | Tify | 18 | ||
ssDNA-binding-TF | 6 | TRAF | 21 | ||
SSXT | 5 | Trihelix | 34 | ||
STAT | 2 | TUB | 12 | ||
STY-LRP1 | 11 | ULT | 1 | ||
SWIB-Plus-3 | 6 | VOZ | 3 | ||
TAZ | 1 | Whirly | 3 | ||
TCP | 26 | WRKY | 106 | ||
Tc-PD | 3 | zf-HD | 18 | ||
Tesmin | 6 | NF-X1 | 2 | ||
TIFY | 22 | NOZZLE | 1 | ||
TTF-type (Zn) | 3 | S1Fa-like | 2 | ||
TUBBY | 12 | Total | 2702 | ||
WD40-like | 353 | Families | 93 | ||
WRKY | 107 | ||||
YEATS | 3 | ||||
ZF-HD | 18 | ||||
Znf-B | 45 | ||||
Znf-LSD | 7 | ||||
Total | 5573 | ||||
Families | 98 | ||||
