Table 1 List of important proteins changing due to at least one condition (effect of nitrate/light and dark/interaction of both light and dark) with their fold change.

From: Proteomic analysis of metabolic adaptation in a unicellular cyanobacterium during light-dark cycles and nitrogen fixation

Gene

Protein names

Locus Tag

Dark

Light

-NO3

+NO3

D-_D+

L-_L+

D-_L-

D+_L+

Respiration

coxB1

Cytochrome c oxidase subunit 2

cce_1977

13.7

3.8

1

0.3

Glycogen synthesis and degradation

glgA1

Glycogen synthase

cce_3396

1.5

1.1

0.8

0.6

glgA2

Glycogen synthase

cce_0890

2.1

1.2

1.2

0.7

glgP1

Alpha-1,4 glucan phosphorylase

cce_1629

3.1

2.6

1.5

1.3

glgP2

Alpha-1,4 glucan phosphorylase

cce_5186

0.1

0.3

1

2.5

glgP3

Alpha-1,4 glucan phosphorylase

cce_1603

0.4

0.5

1.2

1.4

glgX

Glycogen debranching enzyme

cce_3465

1.6

1.7

1.2

1.3

Glycolysis and TCA Cycle

zwf

Glucose-6-phosphate 1-dehydrogenase

cce_2536

2.1

2.2

1.2

1.3

gnd

6-phosphogluconate dehydrogenase, decarboxylating

cce_3746

3.4

5.6

1.7

2.9

opcA

OxPPCycle protein

cce_2535

2

2.2

1.4

1.5

talA

Transaldolase

cce_4687

0.7

0.5

2.1

1.6

talC

Transaldolase

cce_4208

1.5

1.7

0.9

1.1

pgl

6-phosphogluconolactonase

cce_4743

2.8

3.1

1.4

1.6

icd

Isocitrate dehydrogenase [NADP]

cce_3202

1.4

2

0.9

1.4

gabD

Succinate-semialdehyde dehydrogenase (NADP+)

cce_4228

0.8

0.8

1.2

1.2

acnB

Aconitate hydratase B

cce_3280

0.4

0.3

1.9

1.5

Other metabolic pathways

glnA

Glutamine synthetase

cce_4432

2.6

1.9

1.2

0.9

glnB

Nitrogen regulatory protein P-II

cce_1775

2.2

2

1.3

1.1

glsA

Glutaminase

cce_2244

2

2.4

1.3

1.5

glsF

Ferredoxin-dependent glutamate synthase

cce_4353

1.2

1.5

1.2

1.5

carA

Carbamoyl-phosphate synthase small chain

cce_0902

1.9

1.8

1.2

1.1

carB

Carbamoyl-phosphate synthase large chain

cce_2038

4

3.1

1.3

1

pyrFE

Orotate phosphoribosyltransferase

cce_0502

2.9

3.8

0.8

1

pyrG

CTP synthase

cce_2923

9.4

7.4

1.3

1.1

argB

Acetylglutamate kinase

cce_3224

2.1

1.8

1

0.9

argF

Ornithine carbamoyltransferase

cce_3251

2.7

2.5

1.4

1.3

argG

Argininosuccinate synthase

cce_4370

1.8

1.2

1.3

0.9

Circadian clock proteins

kaiA

Circadian clock protein KaiA

cce_0424

1.5

1.3

0.9

0.8

kaiC1

Circadian clock protein kinase KaiC

cce_0422

2.5

4

1.2

1.9

kaiC2

Circadian clock protein

cce_4716

3.2

8.9

1.1

3.2

CO2 Fixation

icfA1

Carbonic anhydrase

cce_2257

1.9

4.3

0.8

1.9

cmpA

Bicarbontate transport system substrate-binding protein

cce_0305

0.1

0.6

0.3

1.2

cmpB

Bicarbontate transport system permease protein

cce_0304

0.1

0.1

0.7

0.5

cmpC

Bicarbontate transport system ATP-binding protein

cce_0303

0

0.1

0.1

0.5

cmpD

Bicarbontate transport system ATP-binding protein

cce_0302

0

0.1

0.2

0.7

cbbL

Ribulose bisphosphate carboxylase large chain

cce_3166

1

1

0.8

0.8

rbcS

Ribulose bisphosphate carboxylase small subunit

cce_3164

0.6

0.8

0.7

1

sbtA

Sodium dependent bicarbonate transporter

cce_2939

1.2

1.1

0.6

0.5

Photosynthesis

ho1

Heme oxygenase (Decyclizing)

cce_2573

0.2

1.6

0.1

0.5

psbA2

Photosystem II protein D1

cce_0636; cce_3501

8.2

6.5

1

0.8

psbA2

Photosystem II protein D1

cce_3411

0.1

0.5

0.9

8.7

psbA4

Photosystem II protein D1

cce_3477

0.3

0.6

3.5

6.2

petA

Cytochrome f

cce_2959

0.5

0.6

0.8

0.9

petB

Cytochrome b6

cce_1383

0.5

0.7

0.8

1.1

petH

Ferredoxin–NADP reductase

cce_0994

7

4.2

1.3

0.8

Protein homeostasis

dnaK2

Chaperone protein DnaK

cce_4004

7.5

5

1.1

0.7

hspA3

Heat shock protein Hsp20

cce_5270

3.5

2.9

0.6

0.5

groEL

Chaperonin GroEL

cce_3330

5.9

4.6

1.3

1

groEL

Chaperonin GroEL

cce_1344

2.7

2.2

1.3

1.1

Proteases

clpC1

ATP-dependent Clp protease, regulatory subunit

cce_4247

1.6

1.7

1

1.1

clpP

ATP-dependent Clp protease proteolytic subunit

cce_0641

2.6

2.4

1.4

1.3

clpP

ATP-dependent Clp protease proteolytic subunit

cce_1911

1.3

0.9

1.2

0.8

clpP2

ATP-dependent Clp protease proteolytic subunit

cce_4439

5.2

4.6

1.6

1.4

clpP4

ATP-dependent Clp protease proteolytic subunit

cce_1910

1.7

1.4

1.3

1

clpX

ATP-dependent Clp protease ATP-binding subunit ClpX

cce_4438

2

2

1

0.9

ftsH

ATP-dependent zinc metalloprotease FtsH

cce_1270

1.2

1.7

0.8

1.1

ftsH2

ATP-dependent zinc metalloprotease FtsH

cce_3579

1.5

1.6

0.9

1

ftsH4

ATP-dependent zinc metalloprotease FtsH

cce_1953

1.9

2.2

1

1.1

ctpA

Carboxyl-terminal processing protease

cce_3991

5.7

5.7

0.9

0.9

ctpB

Carboxyl-terminal protease

cce_0080

2.3

1.3

1.5

0.8

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