Table 5 EHV1-4MP specificity assessment on Donkey and mule specimens containing a herpesvirus.
From: A multiplex real-time PCR assay for detection of equid herpesvirus 1 and 4
Sample name | Species | Specimen | EHV1-4MP Ct | EHV1 Ct47 | Herpesvirus pol identity, accession | |
|---|---|---|---|---|---|---|
EHV1g1775 | EHV1gB444 | |||||
052072 | Donkey | Nasal Exudate | ND | 28.90 | 23.11 | EHV-8, MF431614.1 |
194,585 | Donkey | Nasal/Pharyngeal swab | ND | 30.98 | 27.77 | EHV-8, MF431614.1 |
140854-1 | Donkey | Nasal Exudate | ND | 32.86 | 26.21 | EHV-81, MF431614.1 |
140854-2 | Donkey | Nasal Exudate | ND | ND | 36.00 | Poor quality sequence |
010118 | Donkey | Isolate from Nasal Exudate | ND | ND | ND | EHV-7, NC_043061.1 |
146,315 | Donkey | Nasal/Pharyngeal swab | ND | ND | ND | EHV-7, NC_043061.1 |
058235 | Mini donkey | Fetal membrane | ND | ND | ND | KC825357.12 |
142,071 | Mule | Nasal/Pharyngeal wash | ND | ND | ND | KC825357.12 |
185,643 | Donkey | Whole Blood | ND | ND | ND | KC825357.12 |
023043-2 | Mini donkey | Nasal Exudate | ND | ND | ND | KC825357.12 |
023043-3 | Mini donkey | Whole Blood | ND | ND | ND | KC825357.12 |
229,754 | Donkey | lung, kidney, liver, lymph node | ND | ND | ND | 98.61% match MZ209381.12 |
048022 | Donkey | Nasal Exudate | ND | ND | ND | 98.53% match MZ209381.12 |
127,130 | Donkey | Nasal Exudate | ND | ND | ND | AY054991.12 |
243,608 | Donkey | Whole Blood | ND | ND | ND | 94.58% match zebra herpesvirus AF141889.1 |
073261 | Mini donkey | Brain | ND | ND | ND | 93.98% match zebra herpesvirus AF141889.1 |
‘ND’ denotes ‘not detected’. | ||||||
