Table 1 Description of included cases.

From: Assessment of target-enrichment library preparation and next-generation sequencing of paraffin-embedded gastric biopsies for H. pylori diagnosis and evaluation of virulome and resistome

Sample N

Sex

Age

Previous eradication

Pathology, symptoms

H. pylori Ct

23S rRNA genotype determined by RT-PCR

AST resistance markers

1

Female

6

No

Anemia

28.7

A2142G or A2143G

Cla

2

Female

56

No

Gastritis

25.8

A2142G or A2143G

Cla

3

Female

46

Yes

Gastritis

28.7

A2142G or A2143G

Cla

4

Female

14

No

Gastritis

29.7

A2142G or A2143G

Cla, Lev

5

Female

9

No

Other

28.5

WT

Lev

6

Female

20

Yes

Gastritis

33.3

WT + A2142G or A2143G

 

7

Female

30

No

Other

27.7

WT

Lev

8

Female

13

No

Gastritis

30.6

A2142C

Cla, Lev

9

Female

11

No

Emesis

29.1

A2142G or A2143G

Cla

10

Male

3

No

GERD

34.1

A2142G or A2143G

Cla, Lev

11

Male

22

Yes

Gastritis

32.2

WT

Lev

12

Female

57

Yes

Gastritis

28.1

A2142G or A2143G

Cla

13

Female

14

No

Gastritis

26.3

WT

Lev

14

Male

63

Yes

Gastritis

31.4

WT

Lev

15

Male

1

No

Other

28.1

WT

 

16

Male

53

Yes

Gastritis

29.5

A2142G or A2143G

Cla

17

Male

80

No

Ulcers

32.4

A2142G or A2143G

Cla, Lev

18

Male

1

Yes

Ulcers

33.7

WT + A2142G or A2143G

 

19

Male

68

Yes

Epigastralgia

30

WT

Lev

20

Male

13

No

Other

27.9

WT

 

21

Female

61

Yes

Epigastralgia

33.9

WT

 

22

Male

61

No

Gastritis

29.3

A2142G or A2143G

Cla, Lev

23

Male

32

No

Gastritis

37

A2142G or A2143G

Cla

24

Male

65

No

Other

30.8

WT

 

25

Male

18

Yes

Gastritis

29.1

WT

 

26

Male

65

Yes

Gastritis

28.6

A2142G or A2143G

Cla, Lev

27

Female

40

Yes

Gastritis

34.9

A2142G or A2143G

 

28

Male

87

No

Gastritis

28.7

WT

 

29

Female

39

Yes

Gastritis

29.1

A2142G or A2143G

Cla

30

Female

71

No

Other

32.4

WT

 
  1. GERD, gastroesophageal reflux disease; Cla, clarithromycin; Lev, levofloxacin; AST, antimicrobial susceptibility testing.