Fig. 2

Distribution of functional features among core and disruptive regions in the RA genome. a, b and c. Scatter plots showing the density of CDS (a), transposon (b) and non-coding RNA (ncRNA) (c) in core (green) or disruptive (pink) compartments in log scale. Each box represents the first quartile, median, and third quartile, with whiskers extending 1.5 times the IQR for each compartment class. d, e, f, g and h. Barplots depicting the distribution as percentage of CDS and pseudogenes (d), multigene families (e), TS groups (f) transposon (g) and non-coding RNAs (ncRNAs) (h) in core (green) or disruptive (pink) compartments. MF: multigenic families. In a, b and c, P-values were derived from Mann–Whitney U tests comparing the indicated feature between disruptive and core regions. In d (CDS and MF data), e and f, pseudogenes are included in the analysis.