Table 5 Disruptive and core compartments descriptive statistics.

From: A divide-and-conquer approach to uncover the genomic structure of the highly virulent RA strain of Trypanosoma cruzi

Metric

Disruptive

Core

Significance*

n

703

628

N/A

Total bases

35,500,708

28,843,706

N/A

%GC**

54 (52.8–55)

48 (47–50)

N/A

Length (Kb)**

31.8 (14.9–60.9)

26.7 (13.9–59.6)

0.35

Contigs with such region

353

323

N/A

Contigs 100% such region

63

33

N/A

% occupancy**,***

16.8 (6.7–43.5)

15.6 (6.5–38.0)

0.1065

SSR (n)

967

189

N/A

SSR (mean)

0.18 (0.46)

0.07 (0.19)

3.7 × 10–6

Distance between genes in SSR divergent [n]**

1639.5 (553–3061) [472]

1296 (503–2726) [131]

ns

Distance between genes in SSR convergent [n]**

1856 (1856–3,95.5) [495]

714 (403.5–2042.25) [57]

3.7 × 10–4

PTUs

1226

335

N/A

CDS per PTU**

3 (1–6)

7(2–15)

5 × 10–20

Feature density (copies/10 kb)

 CDS and pseudogenes**

2.3 (1.6–3.1)

3.17 (2.3–3.8)

5.4 × 10–20

 TCHP**

0.44 (0–1.1)

1.42 (0.63–1.87)

3.4 × 10–8

 Transposons**

0.1 (0–0.6)

0 (0–0.3)

3.4 × 10–8

 ncRNA (mean)

0.54 (3.48)

0.03 (0.23)

1.7 × 10–19

  1. *Mann–Whitney unpaired test. **median (Q1-Q3). ***The occupancy was calculated by dividing the length of the region by the length of the contig to which it belongs, and then multiplying the result by 100. N/A: Non applicable; ns: non significant; CDS: Coding sequences; TCHP: Trypanosomatid-conserved hypothetical protein; SSR: strand-switch regions.
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